LXL04_002269 | RubberDandelionOmics

Gene overview

LXL04_002269

Reference: OH-1004 Chr: Chr01 Coordinates: 44910470-44915434 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1932 bp · LXL04_002269|LXL04_002269|OH1004|cDNA

ATGGCGAAGGCGGACGATGAAATGCCTCCTTACGCAAGCGCCGGAGTCGGAGAAAAGCTTCGTAAGAGGACTTCCCGACCAGAGGTTTATGAAGAACCTCAAATTGTTTCTCATGAGGCTGGGCAATATAGGTCTGAAGCCCAGCACTTGGTATCATTGATGCATTCAAGAACCATGGAGGAGGAGTCACCAACTCCTCTTTTAAGGCTTGAAGCATCAATTACAAGTGGTTCAATAAAAAGACATAAACATGGAGACAA...

CDS

Download CDS FASTA

1932 bp · LXL04_002269|LXL04_002269|OH1004|CDS

ATGGCGAAGGCGGACGATGAAATGCCTCCTTACGCAAGCGCCGGAGTCGGAGAAAAGCTTCGTAAGAGGACTTCCCGACCAGAGGTTTATGAAGAACCTCAAATTGTTTCTCATGAGGCTGGGCAATATAGGTCTGAAGCCCAGCACTTGGTATCATTGATGCATTCAAGAACCATGGAGGAGGAGTCACCAACTCCTCTTTTAAGGCTTGAAGCATCAATTACAAGTGGTTCAATAAAAAGACATAAACATGGAGACAA...

Protein

Download Protein FASTA

643 aa · LXL04_002269|LXL04_002269|OH1004|PROTEIN

MAKADDEMPPYASAGVGEKLRKRTSRPEVYEEPQIVSHEAGQYRSEAQHLVSLMHSRTMEEESPTPLLRLEASITSGSIKRHKHGDKRDNFHAYAVGSRRLIYSPAADLANAHKGSTICRQDMKFVNNDATCLPKIPTASLQHLATLENLPDELLTNIFIRLLAKQLALLSQPSFIKSHLHRSIHNKNQILLVFHDDEDDPSDIKPFTVKPTRSPNLELTNFIKLPANHQLKHINGIRIIGSVNGLICSRYGYGYGDSII...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_002269`
TK1151 ID	TkA01G443510
OH-1004 ID	LXL04_002269
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	87.600
Protein coverage (%)	TK1151 63.571 / OH-1004 13.841 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_002269

Location Chr01:44910470-44915434 (-)

Description Similar to At3g06240: F-box/kelch-repeat protein At3g06240

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g06240`	F-box/kelch-repeat protein At3g06240.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002269 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT3G06240

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.518

Rank 1 · LXL04_002269 · OH-1004

Nucleus0.420

Rank 2 · LXL04_002269 · OH-1004

Cell membrane0.139

Rank 3 · LXL04_002269 · OH-1004

Endoplasmic reticulum0.076

Rank 4 · LXL04_002269 · OH-1004

Mitochondrion0.045

Rank 5 · LXL04_002269 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08268.18FBA_3227-424 aa

PF07734.19FBA_1299-466 aa

PF12937.13F-box-like513-550 aa

PF00646.39F-box513-551 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_002269	`PF08268.18`	FBA_3	227	424	2.7e-09	37.2
LXL04_002269	`PF07734.19`	FBA_1	299	466	6.5e-09	35.9
LXL04_002269	`PF12937.13`	F-box-like	513	550	1.5e-10	41.3
LXL04_002269	`PF00646.39`	F-box	513	551	1e-09	38.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8GXC7`	Arabidopsis thaliana	F-box/kelch-repeat protein At3g06240	25.676%	Swiss-Prot	weak database homology

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