LXL04_002236 | RubberDandelionOmics

Gene overview

LXL04_002236

Reference: OH-1004 Chr: Chr01 Coordinates: 44435507-44436401 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

213 bp · LXL04_002236|LXL04_002236|OH1004|cDNA

ATGGCTTCAACCGCTGCCGTACCGTTTTGGAGATCTGCCGGTATGACATACATATCGTACTCGAACATATGTGCGAACCTTGTGAGGAACTGTCTCAAGGAGCCCTACAAGTCCGAAGCTATCACTCGGGAGAAAGTCCATTTCTCCATCTCCAAATGGACCGACGGCAAACCTGAGAAACCTACTATTCGGTCGGATTCCCCTGAAGAATGA

CDS

Download CDS FASTA

213 bp · LXL04_002236|LXL04_002236|OH1004|CDS

ATGGCTTCAACCGCTGCCGTACCGTTTTGGAGATCTGCCGGTATGACATACATATCGTACTCGAACATATGTGCGAACCTTGTGAGGAACTGTCTCAAGGAGCCCTACAAGTCCGAAGCTATCACTCGGGAGAAAGTCCATTTCTCCATCTCCAAATGGACCGACGGCAAACCTGAGAAACCTACTATTCGGTCGGATTCCCCTGAAGAATGA

Protein

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70 aa · LXL04_002236|LXL04_002236|OH1004|PROTEIN

MASTAAVPFWRSAGMTYISYSNICANLVRNCLKEPYKSEAITREKVHFSISKWTDGKPEKPTIRSDSPEE

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_002236`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_002236

Location Chr01:44435507-44436401 (-)

Description Similar to At1g51650: ATP synthase subunit epsilon, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g51650`	Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002236 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006979 response to oxidative stress Biological Process

GO:0008340 determination of adult lifespan Biological Process

GO:0015986 proton motive force-driven ATP synthesis Biological Process

GO:0042776 proton motive force-driven mitochondrial ATP synthesis Biological Process

GO:0045745 positive regulation of G protein-coupled receptor signaling pathway Biological Process

GO:1902600 proton transmembrane transport Biological Process

GO:0005615 extracellular space Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005743 mitochondrial inner membrane Cellular Component

GO:0045259 proton-transporting ATP synthase complex Cellular Component

GO:0001664 G protein-coupled receptor binding Molecular Function

KEGG gene cross-reference

ath:AT1G51650

ddi:DDB_G0276241

dme:Dmel_CG9032

zma:542589

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.456

Rank 1 · LXL04_002236 · OH-1004

Cytoplasm0.223

Rank 2 · LXL04_002236 · OH-1004

Nucleus0.189

Rank 3 · LXL04_002236 · OH-1004

Plastid0.093

Rank 4 · LXL04_002236 · OH-1004

Extracellular0.062

Rank 5 · LXL04_002236 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04627.19ATP-synt_Eps9-56 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_002236	`PF04627.19`	ATP-synt_Eps	9	56	8.8e-24	83.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q96253`	Arabidopsis thaliana	ATP synthase subunit epsilon, mitochondrial	82.609%	Swiss-Prot	strong database homology

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