LXL04_002183 | RubberDandelionOmics

Gene overview

LXL04_002183

Reference: OH-1004 Chr: Chr01 Coordinates: 43396549-43400107 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1676 bp · LXL04_002183|LXL04_002183|OH1004|cDNA

ATGCGACGGGACGGAGCAAACAGGGGAAGGATAAGAGGACTCCATAACGTCTGCTGTTTCTCCCCCAAATTAGCTCGAAAAGCATTGCAGCTTCGTGTAGATATGGGTTTTGCTAAGGAGTACGAGTTCTTAACGGAGATTGGTATCGAGCCTAAAAATTCCGGTAGCTTTGTTAATGGTGCTTGGAAGGGGAGTGGTTCTGTTGTCTCCTCTGTTAATCCTGCTAACAACAAGACCATCGCTGAAGTCGTAGAAGCTTC...

CDS

Download CDS FASTA

1629 bp · LXL04_002183|LXL04_002183|OH1004|CDS

ATGCGACGGGACGGAGCAAACAGGGGAAGGATAAGAGGACTCCATAACGTCTGCTGTTTCTCCCCCAAATTAGCTCGAAAAGCATTGCAGCTTCGTGTAGATATGGGTTTTGCTAAGGAGTACGAGTTCTTAACGGAGATTGGTATCGAGCCTAAAAATTCCGGTAGCTTTGTTAATGGTGCTTGGAAGGGGAGTGGTTCTGTTGTCTCCTCTGTTAATCCTGCTAACAACAAGACCATCGCTGAAGTCGTAGAAGCTTC...

Protein

Download Protein FASTA

542 aa · LXL04_002183|LXL04_002183|OH1004|PROTEIN

MRRDGANRGRIRGLHNVCCFSPKLARKALQLRVDMGFAKEYEFLTEIGIEPKNSGSFVNGAWKGSGSVVSSVNPANNKTIAEVVEASSQDYEEGMQACYEASKIWMQLPAPKRGEIVRQIGDALRSKLQYLGRLLSLEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLEMWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGAPTTPLITIAMTKLIAEVLEKNNLPPAIFTSFCGGAEI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_002183`
TK1151 ID	TkA01G476160
OH-1004 ID	LXL04_002183
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	97.700
Protein coverage (%)	TK1151 96.742 / OH-1004 71.218 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_002183

Location Chr01:43396549-43400107 (-)

Description Similar to ALDH7B4: Aldehyde dehydrogenase family 7 member B4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g54100`	Aldehyde dehydrogenase family 7 member B4.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002183 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006081 aldehyde metabolic process Biological Process

GO:0006554 lysine catabolic process Biological Process

GO:0009269 response to desiccation Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0042997 negative regulation of Golgi to plasma membrane protein transport Biological Process

GO:0097009 energy homeostasis Biological Process

GO:0110076 negative regulation of ferroptosis Biological Process

GO:1905750 negative regulation of endosome to plasma membrane protein transport Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

KEGG gene cross-reference

ath:AT1G54100

dre:334197

mdm:103400922

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.505

Rank 1 · LXL04_002183 · OH-1004

Cytoplasm0.260

Rank 2 · LXL04_002183 · OH-1004

Peroxisome0.217

Rank 3 · LXL04_002183 · OH-1004

Nucleus0.088

Rank 4 · LXL04_002183 · OH-1004

Plastid0.071

Rank 5 · LXL04_002183 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00171.28Aldedh67-521 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_002183	`PF00171.28`	Aldedh	67	521	8.8e-137	457.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SYG7`	Arabidopsis thaliana	Aldehyde dehydrogenase family 7 member B4	83.268%	Swiss-Prot	strong database homology

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