LXL04_002173 | RubberDandelionOmics

Gene overview

LXL04_002173

Reference: OH-1004 Chr: Chr01 Coordinates: 43087674-43090429 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2178 bp · LXL04_002173|LXL04_002173|OH1004|cDNA

ATGGCAATAACTCGGAGAAGGAAGCAACCAGAGGACGAAGTACAGCACCATCCGGATCTGACGCCAGACGAAGACGATGATAAGGAAGAAAAAGCATTGAAAACATCAGCAAAAAAGGATAAGAGCAAAAACTATTCGTGTCTGGATAACTGTTGTTGGTTTGTAGGATGCGTATGCACCGCCTGGTGGCTATTGTTGTTTCTATACAACGCGATGCCCGCCTCCTTCCCGCAATTCGTAACGGAGGCAATCACCGGACC...

CDS

Download CDS FASTA

2178 bp · LXL04_002173|LXL04_002173|OH1004|CDS

ATGGCAATAACTCGGAGAAGGAAGCAACCAGAGGACGAAGTACAGCACCATCCGGATCTGACGCCAGACGAAGACGATGATAAGGAAGAAAAAGCATTGAAAACATCAGCAAAAAAGGATAAGAGCAAAAACTATTCGTGTCTGGATAACTGTTGTTGGTTTGTAGGATGCGTATGCACCGCCTGGTGGCTATTGTTGTTTCTATACAACGCGATGCCCGCCTCCTTCCCGCAATTCGTAACGGAGGCAATCACCGGACC...

Protein

Download Protein FASTA

725 aa · LXL04_002173|LXL04_002173|OH1004|PROTEIN

MAITRRRKQPEDEVQHHPDLTPDEDDDKEEKALKTSAKKDKSKNYSCLDNCCWFVGCVCTAWWLLLFLYNAMPASFPQFVTEAITGPMPDPPGVKCLKEGLKVKHPVVFVPGIVTGGLELWEGHQCMDGLFRKRLWGGTFGEVYKRRIRHHHLHVIRPILVTCKPPILLKTEIDPKIPNQLCFPYQWDLVMLTLLCISRRPSCWVQHMSLDNKTGMDPPGIRVRPVSGLVAADYFAPGYFVWAVLIANLARVGYEEKNMY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_002173`
TK1151 ID	TkA01G477450
OH-1004 ID	LXL04_002173
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	87.400
Protein coverage (%)	TK1151 100.000 / OH-1004 44.966 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_002173

Location Chr01:43087674-43090429 (-)

Description Similar to PDAT1: Phospholipid:diacylglycerol acyltransferase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g13640`	Triacylglycerol formation by an acyl-CoA independent pathway.	Cloning and functional characterization of a phospholipid:diacylglycerol acyltransferase from Arabidopsis.2004 · DOI: 10.1104/pp.104.044354 DGAT1 and PDAT1 acyltransferases have overlapping functions in Arabidopsis triacylglycerol biosynthesis and are essential for normal pollen and seed development.2009 · DOI: 10.1105/tpc.109.071795 DGAT1, DGAT2 and PDAT expression in seeds and other tissues of epoxy and hydroxy fatty acid accumulating plants.2010 · DOI: 10.1007/s11745-010-3385-4
`At3g44830`	Putative phospholipid:diacylglycerol acyltransferase 2.	No verified direct reference in this release
`At1g04010`	Involved in lipid catabolism.	Cellular sterol ester synthesis in plants is performed by an enzyme (phospholipid:sterol acyltransferase) different from the yeast and mammalian acyl-CoA:sterol acyltransferases.2005 · DOI: 10.1074/jbc.m504459200

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002173 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006071 glycerol metabolic process Biological Process

GO:0006629 lipid metabolic process Biological Process

GO:0006672 ceramide metabolic process Biological Process

GO:0019432 triglyceride biosynthetic process Biological Process

GO:0019915 lipid storage Biological Process

GO:0046339 diacylglycerol metabolic process Biological Process

GO:0055091 phospholipid homeostasis Biological Process

GO:0140042 lipid droplet formation Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005637 nuclear inner membrane Cellular Component

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

ath:AT3G44830

ath:AT5G13640

sce:YNR008W

spo:2541187

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.399

Rank 1 · LXL04_002173 · OH-1004

Golgi apparatus0.301

Rank 2 · LXL04_002173 · OH-1004

Lysosome / Vacuole0.133

Rank 3 · LXL04_002173 · OH-1004

Cytoplasm0.110

Rank 4 · LXL04_002173 · OH-1004

Cell membrane0.067

Rank 5 · LXL04_002173 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02450.22LCAT200-422 aa

PF02450.22LCAT537-685 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_002173	`PF02450.22`	LCAT	200	422	5.4e-61	207.7
LXL04_002173	`PF02450.22`	LCAT	537	685	5.4e-61	207.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FNA9`	Arabidopsis thaliana	Phospholipid:diacylglycerol acyltransferase 1	67.818%	Swiss-Prot	strong database homology
`Q9FYC7`	Arabidopsis thaliana	Putative phospholipid:diacylglycerol acyltransferase 2	53.182%	Swiss-Prot	strong database homology
`Q4VCM1`	Arabidopsis thaliana	Phospholipid--sterol O-acyltransferase	30.899%	Swiss-Prot	weak database homology

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