Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1539 bp · LXL04_002172|LXL04_002172|OH1004|cDNA
ATGAACCCACAGCCCAGATCATCTGCAAATGGATTTGCTCGTAAAAGAATTGAAAAAGAAATTGGACCCAAATTAGACAATAAATCACAGCCTGGAAAATCAAACTTCAACAGAATGACAACTTCAGGTATAACTCCCTTTCCTAATTGTCCATTAATTTCATGCTCTCTATCTAATCTTCACTTTTCTCATATTCACAAAAACAAAGAGGGAGCTGAAAATCAAAGCCCATCACGTGAACGTCTAGTTTATATAACAAC...
1539 bp · LXL04_002172|LXL04_002172|OH1004|CDS
ATGAACCCACAGCCCAGATCATCTGCAAATGGATTTGCTCGTAAAAGAATTGAAAAAGAAATTGGACCCAAATTAGACAATAAATCACAGCCTGGAAAATCAAACTTCAACAGAATGACAACTTCAGGTATAACTCCCTTTCCTAATTGTCCATTAATTTCATGCTCTCTATCTAATCTTCACTTTTCTCATATTCACAAAAACAAAGAGGGAGCTGAAAATCAAAGCCCATCACGTGAACGTCTAGTTTATATAACAAC...
Protein
Download Protein FASTA512 aa · LXL04_002172|LXL04_002172|OH1004|PROTEIN
MNPQPRSSANGFARKRIEKEIGPKLDNKSQPGKSNFNRMTTSGITPFPNCPLISCSLSNLHFSHIHKNKEGAENQSPSRERLVYITTSLIGHQVEVQVIDGSVYSGIFHATNAEKDFGIILKMAKITKSGSSQGQKSIPDSVQKPPSKTLIIPAKDLVQVFAKSVSVTRDGSMNDVHHDDILIDSSISQSRHADLERELAPWVPDDDDTDCPELDNTFERHWNRGWDQFEANATLFGVKSTFNEELYTTKLDRGGPQMRE...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_002172 |
|---|---|
| TK1151 ID | TkA01G477460 |
| OH-1004 ID | LXL04_002172 |
| Relationship / confidence | Rbh Sequence Supported / Probable |
| Protein identity (%) | 91.200 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_002172 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:43083074-43085333 (-) | |||||||||
| Description | Similar to CID4: Polyadenylate-binding protein-interacting protein 4 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006417 regulation of translation Biological Process GO:0016071 mRNA metabolic process Biological Process GO:0034063 stress granule assembly Biological Process GO:0005634 nucleus Cellular Component GO:0005829 cytosol Cellular Component GO:0010494 cytoplasmic stress granule Cellular Component GO:0032153 cell division site Cellular Component GO:0003729 mRNA binding Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT1G54170 ath:AT3G14010 ddi:DDB_G0269682 spo:2540677 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF14438.13SM-ATX79-163 aaPF06741.19LsmAD236-307 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_002172 | PF14438.13 | SM-ATX | 79 | 163 | 9.5e-26 | 90.5 |
| LXL04_002172 | PF06741.19 | LsmAD | 236 | 307 | 6.3e-27 | 94.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.