Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2250 bp · LXL04_002141|LXL04_002141|OH1004|cDNA
ATGGAGGGAAAGCCAAAATTCCTTCACGGGACACTCGAAGCCACCATCTTCCATGCCACACCTTATTCTCCACCCTTTCTACTTAATTGCATAAATCCAACAGGAAAACCCGCATATGTTACCATCAAGATTAATCACAAAAAAGTAGCATCAACTACTCACAAAAGTGAGAGAATTTGGAACCAAACGTTACGTGTTCTTTGTGCTTATCCAATAAACACAACAATAACAATCACCCTCAAAACAACATGCACCATTCT...
2250 bp · LXL04_002141|LXL04_002141|OH1004|CDS
ATGGAGGGAAAGCCAAAATTCCTTCACGGGACACTCGAAGCCACCATCTTCCATGCCACACCTTATTCTCCACCCTTTCTACTTAATTGCATAAATCCAACAGGAAAACCCGCATATGTTACCATCAAGATTAATCACAAAAAAGTAGCATCAACTACTCACAAAAGTGAGAGAATTTGGAACCAAACGTTACGTGTTCTTTGTGCTTATCCAATAAACACAACAATAACAATCACCCTCAAAACAACATGCACCATTCT...
Protein
Download Protein FASTA749 aa · LXL04_002141|LXL04_002141|OH1004|PROTEIN
MEGKPKFLHGTLEATIFHATPYSPPFLLNCINPTGKPAYVTIKINHKKVASTTHKSERIWNQTLRVLCAYPINTTITITLKTTCTILGKVNIQAHRLLQDSSLIDGMFPMLMENGKPNPELNLRFMLWFKPANLEPNWRQIIEKKEYNGVKDATFPLRGKCGVTLYQDSHHHPSFKPPCGLPRKLWEDVFVAIENAKYLIYIAGWSFNPNMILVRDSKTEIPHAKGVSLGELLKKKADEGVPVRIMIWDDETSLPFIKNK...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_002141 |
|---|---|
| TK1151 ID | TkA01G479660 |
| OH-1004 ID | LXL04_002141 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 98.300 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_002141 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:42540617-42543178 (+) | ||||||||||||
| Description | Similar to PLDALPHA4: Phospholipase D alpha 4 | ||||||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
Rice
| ||||||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||||||||
| GO annotations (OH1004 source) | GO:0006970 response to osmotic stress Biological Process GO:0006995 cellular response to nitrogen starvation Biological Process GO:0009395 phospholipid catabolic process Biological Process GO:0009791 post-embryonic development Biological Process GO:0009825 multidimensional cell growth Biological Process GO:0016036 cellular response to phosphate starvation Biological Process GO:0016042 lipid catabolic process Biological Process GO:0045848 positive regulation of nitrogen utilization Biological Process GO:0046470 phosphatidylcholine metabolic process Biological Process GO:0048364 root development Biological Process GO:0051301 cell division Biological Process GO:0051365 cellular response to potassium ion starvation Biological Process | ||||||||||||
| KEGG gene cross-reference | ath:AT1G55180 dosa:Os01g0172400 nta:107779725 rcu:8282326 zma:542702 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00614.30PLDc192-737 aaPF13091.13PLDc_2582-636 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_002141 | PF00614.30 | PLDc | 192 | 737 | 2.7e-191 | 637.5 |
| LXL04_002141 | PF13091.13 | PLDc_2 | 582 | 636 | 4.1e-10 | 40.3 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.