LXL04_002009 | RubberDandelionOmics

Gene overview

LXL04_002009

Reference: OH-1004 Chr: Chr01 Coordinates: 39492885-39494923 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1152 bp · LXL04_002009|LXL04_002009|OH1004|cDNA

ATGGGGTTTTCCATACCATCACTTCGACTGATCGTCCTTTTCTTCACCATCTTTACATACGTTATAGTAACCAGTGCATTCACGGGGACATATGGAGTCAACTACGGGCGGATAGCCGACAACATCCCCTCTCCGGAAAGCGTCGTCACCCTCATGAAAGCAGCaaaaatcaagaacacaagaaTCTACGACGCCGACCATGAAGTTCTCAAGGCATTCAAAGGATCTGGAATCGAGATCATCATCGGAGTAGGAAACGA...

CDS

Download CDS FASTA

1152 bp · LXL04_002009|LXL04_002009|OH1004|CDS

ATGGGGTTTTCCATACCATCACTTCGACTGATCGTCCTTTTCTTCACCATCTTTACATACGTTATAGTAACCAGTGCATTCACGGGGACATATGGAGTCAACTACGGGCGGATAGCCGACAACATCCCCTCTCCGGAAAGCGTCGTCACCCTCATGAAAGCAGCAAAAATCAAGAACACAAGAATCTACGACGCCGACCATGAAGTTCTCAAGGCATTCAAAGGATCTGGAATCGAGATCATCATCGGAGTAGGAAACGA...

Protein

Download Protein FASTA

383 aa · LXL04_002009|LXL04_002009|OH1004|PROTEIN

MGFSIPSLRLIVLFFTIFTYVIVTSAFTGTYGVNYGRIADNIPSPESVVTLMKAAKIKNTRIYDADHEVLKAFKGSGIEIIIGVGNEFLKDIGASQDRAMDWVKNNVEPFVPGTHISGIAVGNEVLGGGNQELWEVLLPAVKNIHTALDLLHLADRVEVSSPHSAGVFASSFPPSAGAFKETLVPYMKPLLEFFSQIKSPFYINTYPFLAYISDPEHIDVNYAIFKKNPGIEDAKTKLHYDNMFEAQIDAAYAALEKAGF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_002009`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_002009

Location Chr01:39492885-39494923 (+)

Description Similar to At1g32860: Glucan endo-1,3-beta-glucosidase 11

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g32860`	Glucan endo-1,3-beta-glucosidase 11.	No verified direct reference in this release
`At2g27500`	Glucan endo-1,3-beta-glucosidase 14.	No verified direct reference in this release
`At5g42100`	Plasmodesmal-associated membrane beta-1,3-glucanase involved in plasmodesmal callose degradation and functions in the gating of plasmodesmata.	No verified direct reference in this release
`At4g34480`	Glucan endo-1,3-beta-glucosidase 7.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002009 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005975 carbohydrate metabolic process Biological Process

GO:0006076 (1->3)-beta-D-glucan catabolic process Biological Process

GO:0006952 defense response Biological Process

GO:0007154 cell communication Biological Process

GO:0034407 cell wall (1->3)-beta-D-glucan metabolic process Biological Process

GO:0071555 cell wall organization Biological Process

GO:0140547 acquisition of seed longevity Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT1G32860

ath:AT2G27500

ath:AT4G34480

ath:AT5G42100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.467

Rank 1 · LXL04_002009 · OH-1004

Extracellular0.252

Rank 2 · LXL04_002009 · OH-1004

Endoplasmic reticulum0.094

Rank 3 · LXL04_002009 · OH-1004

Cytoplasm0.085

Rank 4 · LXL04_002009 · OH-1004

Lysosome / Vacuole0.074

Rank 5 · LXL04_002009 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00332.25Glyco_hydro_1732-350 aa

PF29664.1BtgE-BtgC_glyc-hydro49-148 aa

PF29664.1BtgE-BtgC_glyc-hydro248-336 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_002009	`PF00332.25`	Glyco_hydro_17	32	350	3.2e-80	270.8
LXL04_002009	`PF29664.1`	BtgE-BtgC_glyc-hydro	49	148	2.7e-12	47.2
LXL04_002009	`PF29664.1`	BtgE-BtgC_glyc-hydro	248	336	2.7e-12	47.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8L868`	Arabidopsis thaliana	Glucan endo-1,3-beta-glucosidase 11	48.235%	Swiss-Prot	moderate database homology
`Q9ZQG9`	Arabidopsis thaliana	Glucan endo-1,3-beta-glucosidase 14	44.350%	Swiss-Prot	moderate database homology
`Q9FHX5`	Arabidopsis thaliana	Glucan endo-1,3-beta-glucosidase 10	44.548%	Swiss-Prot	moderate database homology
`Q9M069`	Arabidopsis thaliana	Glucan endo-1,3-beta-glucosidase 7	43.895%	Swiss-Prot	moderate database homology

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