LXL04_001963 | RubberDandelionOmics

Gene overview

LXL04_001963

Reference: OH-1004 Chr: Chr01 Coordinates: 38108180-38109298 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1119 bp · LXL04_001963|LXL04_001963|OH1004|cDNA

ATGGCGGAGCTGGGCCCCAAGACGACGGAGCTGCCACCGGACATACTATTCTCCAACATACTTCCAAGGCTGCCGCCCAAATCTCTATCACGTTTCAAGTGTGTTTCAAAGCAATGGCACTCCTTCCTACGACCCCCCCGGTTTCTCCAAATGCACATACTCCATGCAAAAAACACTCAAAATGAGAAGTACATCTTCTTACCTAACACAAGACCATGGGATTTCCGCACCATCGACTGTGAAACACCCGAAGATGGTTT...

CDS

Download CDS FASTA

1119 bp · LXL04_001963|LXL04_001963|OH1004|CDS

ATGGCGGAGCTGGGCCCCAAGACGACGGAGCTGCCACCGGACATACTATTCTCCAACATACTTCCAAGGCTGCCGCCCAAATCTCTATCACGTTTCAAGTGTGTTTCAAAGCAATGGCACTCCTTCCTACGACCCCCCCGGTTTCTCCAAATGCACATACTCCATGCAAAAAACACTCAAAATGAGAAGTACATCTTCTTACCTAACACAAGACCATGGGATTTCCGCACCATCGACTGTGAAACACCCGAAGATGGTTT...

Protein

Download Protein FASTA

372 aa · LXL04_001963|LXL04_001963|OH1004|PROTEIN

MAELGPKTTELPPDILFSNILPRLPPKSLSRFKCVSKQWHSFLRPPRFLQMHILHAKNTQNEKYIFLPNTRPWDFRTIDCETPEDGFTTSRPFPFKVGLRQDISILSSVNGLVCVGIINYSSLDDKISHIILWNPVTNDQKMLPKYRSRRCYMTALHKYELYYSFSENDYKLIWISHRRNVRIYSLKSNKWRKIKSKSKLSSSDSVSYDIMSSVMSNEKFHFLRKFFVFEGGDEKVRLGNDERTRDFMGFLDLKGHAYFC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_001963`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_001963

Location Chr01:38108180-38109298 (+)

Description Similar to At1g47790: Putative F-box protein At1g47790

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g47790`	Putative F-box protein At1g47790.	No verified direct reference in this release
`At1g60370`	Putative F-box protein At1g60370.	No verified direct reference in this release
`At1g12870`	Putative F-box/kelch-repeat protein At1g12870.	No verified direct reference in this release
`At1g11620`	Putative F-box/LRR-repeat/kelch-repeat protein At1g11620.	No verified direct reference in this release
`At1g53370`	Putative F-box protein At1g53370.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_001963 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0048364 root development Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

KEGG gene cross-reference

ath:AT1G11620

ath:AT1G12870

ath:AT1G47790

ath:AT1G53370

ath:AT1G60370

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.505

Rank 1 · LXL04_001963 · OH-1004

Cytoplasm0.468

Rank 2 · LXL04_001963 · OH-1004

Cell membrane0.108

Rank 3 · LXL04_001963 · OH-1004

Endoplasmic reticulum0.077

Rank 4 · LXL04_001963 · OH-1004

Lysosome / Vacuole0.039

Rank 5 · LXL04_001963 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08268.18FBA_3102-202 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_001963	`PF08268.18`	FBA_3	102	202	6.1e-07	29.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FZF8`	Arabidopsis thaliana	Putative F-box protein At1g47790	28.293%	Swiss-Prot	weak database homology
`O80758`	Arabidopsis thaliana	Putative F-box protein At1g60370	26.667%	Swiss-Prot	weak database homology
`Q9LPW2`	Arabidopsis thaliana	Putative F-box/kelch-repeat protein At1g12870	27.941%	Swiss-Prot	weak database homology
`Q9SAB5`	Arabidopsis thaliana	Putative F-box/LRR-repeat/kelch-repeat protein At1g11620	24.103%	Swiss-Prot	weak database homology
`Q9MAG5`	Arabidopsis thaliana	Putative F-box protein At1g53370	28.472%	Swiss-Prot	weak database homology

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