LXL04_001930 | RubberDandelionOmics

Gene overview

LXL04_001930

Reference: OH-1004 Chr: Chr01 Coordinates: 37037328-37085433 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3606 bp · LXL04_001930|LXL04_001930|OH1004|cDNA

ATGGCATGTGCAAGTTTCCTCACCACAAaaactctctcattctctccaaattttcggccaacaaTCACCAAGAGAAATTCCAAGAAaagttcttccaagttcttcatcatctccttagatttcaagttcaagtctagatccaagcaaggaaagatatcatcaagacttggagatctagccaagaaccccatcttcatcatctttcatcttgaaaCTCTACATaccaaagggacgaaggaagacatggatgacGTAAGACA...

CDS

Download CDS FASTA

3606 bp · LXL04_001930|LXL04_001930|OH1004|CDS

ATGGCATGTGCAAGTTTCCTCACCACAAAAACTCTCTCATTCTCTCCAAATTTTCGGCCAACAATCACCAAGAGAAATTCCAAGAAAAGTTCTTCCAAGTTCTTCATCATCTCCTTAGATTTCAAGTTCAAGTCTAGATCCAAGCAAGGAAAGATATCATCAAGACTTGGAGATCTAGCCAAGAACCCCATCTTCATCATCTTTCATCTTGAAACTCTACATACCAAAGGGACGAAGGAAGACATGGATGACGTAAGACA...

Protein

Download Protein FASTA

1201 aa · LXL04_001930|LXL04_001930|OH1004|PROTEIN

MACASFLTTKTLSFSPNFRPTITKRNSKKSSSKFFIISLDFKFKSRSKQGKISSRLGDLAKNPIFIIFHLETLHTKGTKEDMDDVRQLRNDGLRRDIMLMVTSAINQLFTWINDPKEMIIVVIGRVDSGKSTTTGHLIYKLGGIDKRVIERFEKEATEMNKRSFKYAWVLVKLKAEHERGITMDIALWKFETTTYNCTVVDAPGHRDFIKNMITGTYQADCAVLIVDSTTGGFETGISKDGQIPEHALLAFTTGMDATTP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_001930`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_001930

Location Chr01:37037328-37085433 (-)

Description Similar to KIN12C: Kinesin-like protein KIN-12C

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g17360`	Involved in the spatial control of cytokinesis by a proper phragmoplast guidance.	Two kinesins are involved in the spatial control of cytokinesis in Arabidopsis thaliana.2006 · DOI: 10.1016/j.cub.2006.03.034 Tangled localization at the cortical division site of plant cells occurs by several mechanisms.2011 · DOI: 10.1242/jcs.073676

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_001930 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000281 mitotic cytokinesis Biological Process

GO:0000911 cytokinesis by cell plate formation Biological Process

GO:0006412 translation Biological Process

GO:0006414 translational elongation Biological Process

GO:0007018 microtubule-based movement Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005874 microtubule Cellular Component

GO:0009524 phragmoplast Cellular Component

GO:0032153 cell division site Cellular Component

GO:0003729 mRNA binding Molecular Function

GO:0003746 translation elongation factor activity Molecular Function

GO:0003777 microtubule motor activity Molecular Function

KEGG gene cross-reference

ath:AT3G17360

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.412

Rank 1 · LXL04_001930 · OH-1004

Nucleus0.252

Rank 2 · LXL04_001930 · OH-1004

Mitochondrion0.196

Rank 3 · LXL04_001930 · OH-1004

Cell membrane0.117

Rank 4 · LXL04_001930 · OH-1004

Endoplasmic reticulum0.112

Rank 5 · LXL04_001930 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00009.34GTP_EFTU118-256 aa

PF00225.30Kinesin277-488 aa

PF16796.12Microtub_bd307-423 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_001930	`PF00009.34`	GTP_EFTU	118	256	3.6e-33	115.5
LXL04_001930	`PF00225.30`	Kinesin	277	488	1.7e-41	143.0
LXL04_001930	`PF16796.12`	Microtub_bd	307	423	5.8e-10	40.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q27IK7`	Arabidopsis thaliana	Kinesin-like protein KIN-12C	63.774%	Swiss-Prot	weak database homology

JBrowse

View in Genome Browser

Gene Card