Gene Card
Gene overview
cDNA / CDS / Protein Sequences
3486 bp · LXL04_001843|LXL04_001843|OH1004|cDNA
ATGAGCATCGTACCACAAGAGACAGTTGAGGTCATAGCACAAAGCATCGGCATAAATAATTTATCTCCAGATGCTGCATTAGCTCTTGCTCCTGATGTAGAATACCGAATGCGGGAAATAATGCAGGAAGCAATCAAATGCATGCACCATTCAAAAAGAACCACATTGACCACAGATGATGTAGACAGTGCACTCACCATGAGAAACGTTGAGCCAATCTATGGATTCACATCTGGAGACCCATTACGGTTCAAAAAAGC...
3486 bp · LXL04_001843|LXL04_001843|OH1004|CDS
ATGAGCATCGTACCACAAGAGACAGTTGAGGTCATAGCACAAAGCATCGGCATAAATAATTTATCTCCAGATGCTGCATTAGCTCTTGCTCCTGATGTAGAATACCGAATGCGGGAAATAATGCAGGAAGCAATCAAATGCATGCACCATTCAAAAAGAACCACATTGACCACAGATGATGTAGACAGTGCACTCACCATGAGAAACGTTGAGCCAATCTATGGATTCACATCTGGAGACCCATTACGGTTCAAAAAAGC...
Protein
Download Protein FASTA1161 aa · LXL04_001843|LXL04_001843|OH1004|PROTEIN
MSIVPQETVEVIAQSIGINNLSPDAALALAPDVEYRMREIMQEAIKCMHHSKRTTLTTDDVDSALTMRNVEPIYGFTSGDPLRFKKALGHKDLFYIDDKDVDFKDVIEAPLPKAPLDTSIFCHWLAIEGVQPAIPENAPVEVITVLPDSKKPEQKSNELPVDIRLPVKHVLSRELQLYFNKITELAVNMPDTVLFKEALMSLATDSGLHPLVPYFTCFIEDEVSRGLNDFHLLFALMRLVSSLLQNPHIHVEPYLHQLMP...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_001843 |
|---|---|
| TK1151 ID | TkA01G504320 |
| OH-1004 ID | LXL04_001843 |
| Relationship / confidence | Sequence Supported Annotation Or Model Conflict / Review |
| Protein identity (%) | 98.200 |
| Protein coverage (%) | TK1151 96.784 / OH-1004 28.252Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_001843 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:34892129-34899228 (+) | |||||||||
| Description | Similar to TAF6: Transcription initiation factor TFIID subunit 6 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006282 regulation of DNA repair Biological Process GO:0006352 DNA-templated transcription initiation Biological Process GO:0006357 regulation of transcription by RNA polymerase II Biological Process GO:0006366 transcription by RNA polymerase II Biological Process GO:0006367 transcription initiation at RNA polymerase II promoter Biological Process GO:0008285 negative regulation of cell population proliferation Biological Process GO:0009860 pollen tube growth Biological Process GO:0042789 mRNA transcription by RNA polymerase II Biological Process GO:0045786 negative regulation of cell cycle Biological Process GO:0045815 transcription initiation-coupled chromatin remodeling Biological Process GO:0045893 positive regulation of DNA-templated transcription Biological Process GO:0051123 RNA polymerase II preinitiation complex assembly Biological Process | |||||||||
| KEGG gene cross-reference | ath:AT1G04950 ath:AT1G54360 hsa:6878 spo:2539133 xla:397724 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF02969.24TAF1-65 aaPF00125.31Histone21-65 aaPF07571.20TAF6_C167-349 aaPF13837.13Myb_DNA-bind_4906-978 aaPF14303.13NAM-associated1011-1141 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_001843 | PF02969.24 | TAF | 1 | 65 | 1.5e-31 | 109.0 |
| LXL04_001843 | PF00125.31 | Histone | 21 | 65 | 2e-06 | 28.8 |
| LXL04_001843 | PF07571.20 | TAF6_C | 167 | 349 | 1.3e-70 | 237.6 |
| LXL04_001843 | PF13837.13 | Myb_DNA-bind_4 | 906 | 978 | 9.9e-07 | 29.8 |
| LXL04_001843 | PF14303.13 | NAM-associated | 1011 | 1141 | 8.5e-06 | 27.4 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.