LXL04_001777 | RubberDandelionOmics

Gene overview

LXL04_001777

Reference: OH-1004 Chr: Chr01 Coordinates: 33209077-33210480 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

462 bp · LXL04_001777|LXL04_001777|OH1004|cDNA

ATGTGTACGTCAAGGTCTTCATCGACTCAGAAGAATCCTACAAGCAATTGGAAGCATAATCGGAGATTTATCGGAGATTGTAGATTGTATCATCGCACCATGAGACGGCGACCAGGAATCGGTGGTTTACAGACCATCGCCGCTGCTAGGGTCGTCAGACCCTGCCTACGAGCAACTACTGGATTCCTTAGCCATGGTTGCATGACACACACCTGTACGGCTGTACCTCTTCTTGAAGCCCTACTTCGTTGGAGAGAAAC...

CDS

Download CDS FASTA

462 bp · LXL04_001777|LXL04_001777|OH1004|CDS

ATGTGTACGTCAAGGTCTTCATCGACTCAGAAGAATCCTACAAGCAATTGGAAGCATAATCGGAGATTTATCGGAGATTGTAGATTGTATCATCGCACCATGAGACGGCGACCAGGAATCGGTGGTTTACAGACCATCGCCGCTGCTAGGGTCGTCAGACCCTGCCTACGAGCAACTACTGGATTCCTTAGCCATGGTTGCATGACACACACCTGTACGGCTGTACCTCTTCTTGAAGCCCTACTTCGTTGGAGAGAAAC...

Protein

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153 aa · LXL04_001777|LXL04_001777|OH1004|PROTEIN

MCTSRSSSTQKNPTSNWKHNRRFIGDCRLYHRTMRRRPGIGGLQTIAAARVVRPCLRATTGFLSHGCMTHTCTAVPLLEALLRWRETDLSRNYLNGTIRPQWAPMRLGDLSLMGNRLSGPFPRVLTRITTLVNLSIEGNRFSGSIPQEIVCEN

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_001777`
TK1151 ID	TkA04G359130
OH-1004 ID	LXL04_001777
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 23.016 / OH-1004 18.954 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_001777

Location Chr01:33209077-33210480 (+)

Description Similar to At1g07650: Probable LRR receptor-like serine/threonine-protein kinase At1g07650

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g07650`	Probable LRR receptor-like serine/threonine-protein kinase At1g07650.	No verified direct reference in this release
`At1g53420`	Probable LRR receptor-like serine/threonine-protein kinase At1g53420.	No verified direct reference in this release
`At3g14840`	Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840.	No verified direct reference in this release
`At1g53430`	Probable LRR receptor-like serine/threonine-protein kinase At1g53430.	No verified direct reference in this release
`At1g29750`	Probable LRR receptor-like serine/threonine-protein kinase RFK1.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_001777 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009861 jasmonic acid and ethylene-dependent systemic resistance Biological Process

GO:0031667 response to nutrient levels Biological Process

GO:0045088 regulation of innate immune response Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0016020 membrane Cellular Component

GO:0004672 protein kinase activity Molecular Function

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT1G07650

ath:AT1G29750

ath:AT1G53420

ath:AT1G53430

ath:AT3G14840

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.275

Rank 1 · LXL04_001777 · OH-1004

Cytoplasm0.235

Rank 2 · LXL04_001777 · OH-1004

Extracellular0.219

Rank 3 · LXL04_001777 · OH-1004

Cell membrane0.168

Rank 4 · LXL04_001777 · OH-1004

Endoplasmic reticulum0.093

Rank 5 · LXL04_001777 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`C0LGE0`	Arabidopsis thaliana	Probable LRR receptor-like serine/threonine-protein kinase At1g07650	62.162%	Swiss-Prot	weak database homology
`C0LGG7`	Arabidopsis thaliana	Probable LRR receptor-like serine/threonine-protein kinase At1g53420	43.529%	Swiss-Prot	moderate database homology
`C0LGN2`	Arabidopsis thaliana	Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840	42.353%	Swiss-Prot	moderate database homology
`C0LGG8`	Arabidopsis thaliana	Probable LRR receptor-like serine/threonine-protein kinase At1g53430	50.000%	Swiss-Prot	weak database homology
`Q9FXF2`	Arabidopsis thaliana	Probable LRR receptor-like serine/threonine-protein kinase RFK1	44.000%	Swiss-Prot	weak database homology

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