Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1323 bp · LXL04_001694|LXL04_001694|OH1004|cDNA
ATGCCTTCCAGAAGAAGAACGCTTCTCAAAGTCATCATCCTCGGGGACAGCGGATATGTAAACAAGAAATTTAGCAATCAATACAAGGCAACAATAGGAGCTGATTTCTTGACAAAAGAAGTGGAATTTGAGGACAGGCTCTTCACTCTACAGATCTGGGATACAGCTGGACAGGAAAGATTTCAGAGCCTTGGGGTTGCCTTTTACAGAGGTGCAGATTGTTGTGTTCTTGTGTATGATGTGAATGTGCAAAAGTCTTT...
1323 bp · LXL04_001694|LXL04_001694|OH1004|CDS
ATGCCTTCCAGAAGAAGAACGCTTCTCAAAGTCATCATCCTCGGGGACAGCGGATATGTAAACAAGAAATTTAGCAATCAATACAAGGCAACAATAGGAGCTGATTTCTTGACAAAAGAAGTGGAATTTGAGGACAGGCTCTTCACTCTACAGATCTGGGATACAGCTGGACAGGAAAGATTTCAGAGCCTTGGGGTTGCCTTTTACAGAGGTGCAGATTGTTGTGTTCTTGTGTATGATGTGAATGTGCAAAAGTCTTT...
Protein
Download Protein FASTA440 aa · LXL04_001694|LXL04_001694|OH1004|PROTEIN
MPSRRRTLLKVIILGDSGYVNKKFSNQYKATIGADFLTKEVEFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVQKSFDDLNNWREEFLIQASPSDPENFPFVVLGNKVDVDGGNSRVVSEKKARAWCAAKGNIPYFETSAKEGINVEEAFQVIAKNALKSGEEEEIGADCCVLVYDVNVQKSFDDLNNWREEFLIQNGGLASPDYMTQLVDISRVVDKSPGIEPGSRVVCERVQINELSRFKNLNNLFSS...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_001694 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_001694 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:31470361-31482256 (-) | |||||||||
| Description | Similar to Ras-related protein Rab7 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006886 intracellular protein transport Biological Process GO:0006979 response to oxidative stress Biological Process GO:0007033 vacuole organization Biological Process GO:0009651 response to salt stress Biological Process GO:0015031 protein transport Biological Process GO:0045324 late endosome to vacuole transport Biological Process GO:0000325 plant-type vacuole Cellular Component GO:0005634 nucleus Cellular Component GO:0005774 vacuolar membrane Cellular Component GO:0005794 Golgi apparatus Cellular Component GO:0005829 cytosol Cellular Component GO:0005886 plasma membrane Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT1G49300 ath:AT3G18820 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00071.29Ras19-167 aaPF08477.20Roc19-119 aaPF00025.28Arf29-166 aaPF00009.34GTP_EFTU38-165 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_001694 | PF00071.29 | Ras | 19 | 167 | 3.2e-50 | 170.6 |
| LXL04_001694 | PF08477.20 | Roc | 19 | 119 | 5.7e-23 | 82.1 |
| LXL04_001694 | PF00025.28 | Arf | 29 | 166 | 5.9e-07 | 29.8 |
| LXL04_001694 | PF00009.34 | GTP_EFTU | 38 | 165 | 7.5e-06 | 26.4 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.