LXL04_001692 | RubberDandelionOmics

Gene overview

LXL04_001692

Reference: OH-1004 Chr: Chr01 Coordinates: 31433065-31435187 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

934 bp · LXL04_001692|LXL04_001692|OH1004|cDNA

TCATCGGATCATTGACTTTTTCGAAATTTGAAGAGTGAAGACCATCCCCAAGTGTCCGGTTCCCTATCCTCTCTCTCAGTCTCCCTCCTCTGCAAGCGCAAGCAAACACGCAGTAGGAACGATGGCAGCGTCCGCCATATCAACATCCTTTACTCTCTCTAAAGTTTCACGGCGTGAATTCTTTTCTCAACGAAATTCGAAGAGGAAATCAATCGTCTGTTCCTTGCCAAGTCCATACAGAGATACATCTAAAATCGGGT...

CDS

Download CDS FASTA

813 bp · LXL04_001692|LXL04_001692|OH1004|CDS

ATGGCAGCGTCCGCCATATCAACATCCTTTACTCTCTCTAAAGTTTCACGGCGTGAATTCTTTTCTCAACGAAATTCGAAGAGGAAATCAATCGTCTGTTCCTTGCCAAGTCCATACAGAGATACATCTAAAATCGGGTTTTCAAGTAAAGCACAAAATTTGCAGTTTACACCCGAGGAACCACACTCACCAATTCTTCATAATTTAAGTTATAATCCAGTTGTAGCAAGAAGAGGGGCTCCACCCATAATGCCAGCTGT...

Protein

Download Protein FASTA

270 aa · LXL04_001692|LXL04_001692|OH1004|PROTEIN

MAASAISTSFTLSKVSRREFFSQRNSKRKSIVCSLPSPYRDTSKIGFSSKAQNLQFTPEEPHSPILHNLSYNPVVARRGAPPIMPAVMTPGGPLDLSTVLFRNRIIFVGQPINSQVAQRVISQLVTLATIDDKADILVYVNCPGGSTYSVLAIYDCMSWIKPKVGTVAFGVAASEGALLLAGGEKGMRYAMPNARIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKIDMMYSAFTGQSLEKVQQYTERDRFLSVSEALEFG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_001692`
TK1151 ID	TkA01G518520
OH-1004 ID	LXL04_001692
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_001692

Location Chr01:31433065-31435187 (-)

Description Similar to CLPP6: ATP-dependent Clp protease proteolytic subunit 6, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g11750`	Cleaves peptides in various proteins in a process that requires ATP hydrolysis.	Structural and functional insights into the chloroplast ATP-dependent Clp protease in Arabidopsis.2006 · DOI: 10.1105/tpc.106.044594

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_001692 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006515 protein quality control for misfolded or incompletely synthesized proteins Biological Process

GO:0009658 chloroplast organization Biological Process

GO:0015979 photosynthesis Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0009368 endopeptidase Clp complex Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009532 plastid stroma Cellular Component

GO:0009534 chloroplast thylakoid Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0009840 chloroplastic endopeptidase Clp complex Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0004176 ATP-dependent peptidase activity Molecular Function

KEGG gene cross-reference

ath:AT1G11750

pmi:PMT9312_1748

sep:SE_0551

ser:SERP0436

syn:sll0534

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.961

Rank 1 · LXL04_001692 · OH-1004

Mitochondrion0.047

Rank 2 · LXL04_001692 · OH-1004

Nucleus0.022

Rank 3 · LXL04_001692 · OH-1004

Cytoplasm0.013

Rank 4 · LXL04_001692 · OH-1004

Cell membrane0.010

Rank 5 · LXL04_001692 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00574.29CLP_protease95-268 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_001692	`PF00574.29`	CLP_protease	95	268	3.9e-65	219.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SAA2`	Arabidopsis thaliana	ATP-dependent Clp protease proteolytic subunit 6, chloroplastic	71.174%	Swiss-Prot	strong database homology

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