LXL04_001687 | RubberDandelionOmics

Gene overview

LXL04_001687

Reference: OH-1004 Chr: Chr01 Coordinates: 31284034-31285946 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1707 bp · LXL04_001687|LXL04_001687|OH1004|cDNA

ATGTATCCTAACTCCATACTCGAGGAAACCCAATTCCTAGAATATAAACCCTTTGAAGGGTACGAACAGATGTACAATCGGTTTACGGCGCCGGAAATGGAGAACCTAGCTGTCGACGAAGAACTCCCTCCGTTGGAAGACGTAAACACCACCATTAACATTTACTGCAATCAGTTCGATACACACCAATTGTCGGTCCACGTCCACGATCTCGATAACCATGATCAGACGTCGTTTTCGGTACCGGAATTCGACCAATT...

CDS

Download CDS FASTA

1701 bp · LXL04_001687|LXL04_001687|OH1004|CDS

ATGTATCCTAACTCCATACTCGAGGAAACCCAATTCCTAGAATATAAACCCTTTGAAGGGTACGAACAGATGTACAATCGGTTTACGGCGCCGGAAATGGAGAACCTAGCTGTCGACGAAGAACTCCCTCCGTTGGAAGACGTAAACACCACCATTAACATTTACTGCAATCAGTTCGATACACACCAATTGTCGGTCCACGTCCACGATCTCGATAACCATGATCAGACGTCGTTTTCGGTACCGGAATTCGACCAATT...

Protein

Download Protein FASTA

566 aa · LXL04_001687|LXL04_001687|OH1004|PROTEIN

MYPNSILEETQFLEYKPFEGYEQMYNRFTAPEMENLAVDEELPPLEDVNTTINIYCNQFDTHQLSVHVHDLDNHDQTSFSVPEFDQLTKGITNSKLKSKSAYPELSSPASLELQSCYRSKFKSLPEAYIEKDVPEFGKNLSAVEIIKLAAEKFIKFSTQQVNGYTMFTHPYGSSAFTSLSIDETREVELVYQLLTAAEKVGRKQFDIVSKFIARCGRVACDSGSPVERLVFYFCEALQKRIGKEIGVHVATKRERKVTLI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_001687`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_001687

Location Chr01:31284034-31285946 (+)

Description Similar to GAI1: DELLA protein GAI1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g66350`	Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway.	Arabidopsis RGL1 encodes a negative regulator of gibberellin responses.2002 · DOI: 10.1105/tpc.010325 Gibberellin regulates Arabidopsis seed germination via RGL2, a GAI/RGA-like gene whose expression is up-regulated following imbibition.2002 · DOI: 10.1101/gad.969002 Gibberellin regulates Arabidopsis floral development via suppression of DELLA protein function.2004 · DOI: 10.1242/dev.00992 Loss of function of four DELLA genes leads to light- and gibberellin-independent seed germination in Arabidopsis.2005 · DOI: 10.1007/s00425-005-0057-3

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_001687 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0006357 regulation of transcription by RNA polymerase II Biological Process

GO:0007584 response to nutrient Biological Process

GO:0009610 response to symbiotic fungus Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009739 response to gibberellin Biological Process

GO:0009740 gibberellic acid mediated signaling pathway Biological Process

GO:0009908 flower development Biological Process

GO:0009938 negative regulation of gibberellic acid mediated signaling pathway Biological Process

GO:0010187 negative regulation of seed germination Biological Process

GO:0010247 detection of phosphate ion Biological Process

KEGG gene cross-reference

ath:AT1G66350

mtr:11438339

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.674

Rank 1 · LXL04_001687 · OH-1004

Cytoplasm0.348

Rank 2 · LXL04_001687 · OH-1004

Cell membrane0.055

Rank 3 · LXL04_001687 · OH-1004

Endoplasmic reticulum0.039

Rank 4 · LXL04_001687 · OH-1004

Plastid0.036

Rank 5 · LXL04_001687 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03514.21GRAS190-564 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_001687	`PF03514.21`	GRAS	190	564	2.8e-82	277.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9C8Y3`	Arabidopsis thaliana	DELLA protein RGL1	29.211%	Swiss-Prot	weak database homology

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