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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_001663
Reference: OH-1004 Chr: Chr01 Coordinates: 30879101-30881020 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1920 bp · LXL04_001663|LXL04_001663|OH1004|cDNA

ATGAAACCCTGCAAGTCTTTCGTACTCGTAATATTAAAACGGCTCAATTCGACAACCATTTTCGGCACTAATCAAGGTCAGTACACCCTCCACTTCTCTCCACTTTCAATATGTCAAACCAAATCCTTGATCACTATACCCACACACAACCCAACTGTAACTCCGCAGTCTCTTCAAAAATCCATCTCTTGTTCTCAgtggcatttcatcgaacagaTATCAGACACCCTCACACCCACCACAATCTCCACCGCCCTCTA...

CDS

Download CDS FASTA

1920 bp · LXL04_001663|LXL04_001663|OH1004|CDS

ATGAAACCCTGCAAGTCTTTCGTACTCGTAATATTAAAACGGCTCAATTCGACAACCATTTTCGGCACTAATCAAGGTCAGTACACCCTCCACTTCTCTCCACTTTCAATATGTCAAACCAAATCCTTGATCACTATACCCACACACAACCCAACTGTAACTCCGCAGTCTCTTCAAAAATCCATCTCTTGTTCTCAGTGGCATTTCATCGAACAGATATCAGACACCCTCACACCCACCACAATCTCCACCGCCCTCTA...

Protein

Download Protein FASTA

639 aa · LXL04_001663|LXL04_001663|OH1004|PROTEIN

MKPCKSFVLVILKRLNSTTIFGTNQGQYTLHFSPLSICQTKSLITIPTHNPTVTPQSLQKSISCSQWHFIEQISDTLTPTTISTALYNLRASPSLVLQFTQYLNPNNTDIECYCLSIAIICQLPSPKSSLQFIKSVITSRRFSYNDVFNGLVTAREQLGISSTIVFDLWIKGLCELKRAEEAFKYFYLMKHKGFFPKIETCNNMLTLFIRLNHTQTTWVLFAEMFKLKINPTVHTYNIMVNLLCKEGKLKLAKDFITTME...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_001663
TK1151 IDTkA08G033790
OH-1004 IDLXL04_001663
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)92.200
Protein coverage (%)TK1151 35.804 / OH-1004 36.307
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_001663
LocationChr01:30879101-30881020 (-)
DescriptionSimilar to At2g15630: Pentatricopeptide repeat-containing protein At2g15630, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g15630 Pentatricopeptide repeat-containing protein At2g15630, mitochondrial. No verified direct reference in this release
At5g39710 Pentatricopeptide repeat-containing protein At5g39710. No verified direct reference in this release
At1g62670 Pentatricopeptide repeat-containing protein At1g62670, mitochondrial. No verified direct reference in this release
At5g01110 Pentatricopeptide repeat-containing protein At5g01110. No verified direct reference in this release
At1g05670 Pentatricopeptide repeat-containing protein At1g05670, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_001663 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT2G15630
ath:AT5G39710
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.859
Rank 1 · LXL04_001663 · OH-1004
Plastid0.072
Rank 2 · LXL04_001663 · OH-1004
Nucleus0.047
Rank 3 · LXL04_001663 · OH-1004
Cytoplasm0.034
Rank 4 · LXL04_001663 · OH-1004
Cell membrane0.011
Rank 5 · LXL04_001663 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13812.13PPR_3189-243 aa
PF13041.13PPR_2196-245 aa
PF29070.1MSC6_N199-285 aa
PF17177.11PPR_long215-287 aa
PF12854.14PPR_1229-260 aa
PF13041.13PPR_2235-279 aa
PF01535.27PPR235-264 aa
PF23276.3TPR_24244-338 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_001663PF13812.13PPR_31892432.6e-75249.2
LXL04_001663PF13041.13PPR_21962452.1e-154502.3
LXL04_001663PF29070.1MSC6_N1992853.9e-31109.2
LXL04_001663PF17177.11PPR_long2152871.7e-44152.5
LXL04_001663PF12854.14PPR_12292602.7e-120392.4
LXL04_001663PF13041.13PPR_22352792.1e-154502.3
LXL04_001663PF01535.27PPR2352644.4e-97312.5
LXL04_001663PF23276.3TPR_242443381.8e-39135.4
LXL04_001663PF13812.13PPR_32452782.6e-75249.2
LXL04_001663PF12854.14PPR_12632952.7e-120392.4
LXL04_001663PF13041.13PPR_22663152.1e-154502.3
LXL04_001663PF01535.27PPR2692994.4e-97312.5
LXL04_001663PF17177.11PPR_long2834141.7e-44152.5
LXL04_001663PF29070.1MSC6_N2853573.9e-31109.2
LXL04_001663PF13812.13PPR_32903502.6e-75249.2
LXL04_001663PF12854.14PPR_12973302.7e-120392.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9ZQF1Arabidopsis thalianaPentatricopeptide repeat-containing protein At2g15630, mitochondrial49.656%Swiss-Protmoderate database homology
Q9FIX3Arabidopsis thalianaPentatricopeptide repeat-containing protein At5g3971030.580%Swiss-Protmoderate database homology
Q9SXD1Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g62670, mitochondrial34.792%Swiss-Protmoderate database homology
Q9LFC5Arabidopsis thalianaPentatricopeptide repeat-containing protein At5g0111030.450%Swiss-Protmoderate database homology
Q0WVK7Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g05670, mitochondrial29.508%Swiss-Protweak database homology

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