LXL04_001526 | RubberDandelionOmics

Gene overview

LXL04_001526

Reference: OH-1004 Chr: Chr01 Coordinates: 28409031-28410176 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

558 bp · LXL04_001526|LXL04_001526|OH1004|cDNA

ATGGCTTCATCTGGGGGAGAGGAAACACCTGAAATTCTTGCATTTATGAAGCTAGCATTAGAACAGGCAAAAATCGCATTTGAAAGCCTTGAGGTGCCTGTAGGATGTGTTATTGTTATGGATGGAAAAGTCATATCACATGGAAGAAATCGGACTAATGAAACAAGAAATGCTACAAGACATGCTGAAATGGAAGCTATTGATGTTTTGCTTAATGAgtggaaagaaaagaaacaTACAAAACATCAAGTTGCTGACAT...

CDS

Download CDS FASTA

558 bp · LXL04_001526|LXL04_001526|OH1004|CDS

ATGGCTTCATCTGGGGGAGAGGAAACACCTGAAATTCTTGCATTTATGAAGCTAGCATTAGAACAGGCAAAAATCGCATTTGAAAGCCTTGAGGTGCCTGTAGGATGTGTTATTGTTATGGATGGAAAAGTCATATCACATGGAAGAAATCGGACTAATGAAACAAGAAATGCTACAAGACATGCTGAAATGGAAGCTATTGATGTTTTGCTTAATGAGTGGAAAGAAAAGAAACATACAAAACATCAAGTTGCTGACAT...

Protein

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185 aa · LXL04_001526|LXL04_001526|OH1004|PROTEIN

MASSGGEETPEILAFMKLALEQAKIAFESLEVPVGCVIVMDGKVISHGRNRTNETRNATRHAEMEAIDVLLNEWKEKKHTKHQVADMFSKCYLYVTCEPCIMCASALSFLGIKEVFYGCANDKFGGCGSILSLHTTTTTTSDIGRKSYKCTGGIMGEEAVNLFRNFYELGNPNAPKPHRQLVQQP

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_001526`
TK1151 ID	TkA01G528680
OH-1004 ID	LXL04_001526
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_001526

Location Chr01:28409031-28410176 (+)

Description Similar to TAD2: tRNA-specific adenosine deaminase TAD2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g48175`	Involved in RNA editing.	Identification of enzymes for adenosine-to-inosine editing and discovery of cytidine-to-uridine editing in nucleus-encoded transfer RNAs of Arabidopsis.2014 · DOI: 10.1104/pp.114.250498

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_001526 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002100 tRNA wobble adenosine to inosine editing Biological Process

GO:0006400 tRNA modification Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0008251 tRNA-specific adenosine deaminase activity Molecular Function

GO:0008270 zinc ion binding Molecular Function

GO:0052717 tRNA-specific adenosine-34 deaminase activity Molecular Function

KEGG gene cross-reference

ath:AT1G48175

bta:615418

mmu:66757

xtr:780017

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.629

Rank 1 · LXL04_001526 · OH-1004

Nucleus0.486

Rank 2 · LXL04_001526 · OH-1004

Mitochondrion0.125

Rank 3 · LXL04_001526 · OH-1004

Cell membrane0.066

Rank 4 · LXL04_001526 · OH-1004

Endoplasmic reticulum0.043

Rank 5 · LXL04_001526 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00383.30dCMP_cyt_deam_114-119 aa

PF14437.13MafB19-deam14-138 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_001526	`PF00383.30`	dCMP_cyt_deam_1	14	119	1.5e-22	80.1
LXL04_001526	`PF14437.13`	MafB19-deam	14	138	4.9e-17	62.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q6IDB6`	Arabidopsis thaliana	tRNA-specific adenosine deaminase TAD2	70.588%	Swiss-Prot	strong database homology

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