LXL04_001457 | RubberDandelionOmics

Gene overview

LXL04_001457

Reference: OH-1004 Chr: Chr01 Coordinates: 27165033-27167093 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1254 bp · LXL04_001457|LXL04_001457|OH1004|cDNA

AtggagaagaaggaagaagttTCCAAAGAGCATGGGAATTCGGAAGCAGCTTCACGAACACTATCAGACGGTTCCATTTGTGGATTCGAATCTCTTCATCGACTCCTCGAATCGTCCCTCTCTCCCCCAGTTTTTAAGGAAGTCAGCCGGTTGCTTATTGGACTAAATTGTGGAAAACCACTTGAACCCTTGACAATAGTAGAAACCGCCAAAGGGTTGTCCTCACAACACGATTTTGATATTCAGGCATTCAGCTTTCA...

CDS

Download CDS FASTA

1254 bp · LXL04_001457|LXL04_001457|OH1004|CDS

ATGGAGAAGAAGGAAGAAGTTTCCAAAGAGCATGGGAATTCGGAAGCAGCTTCACGAACACTATCAGACGGTTCCATTTGTGGATTCGAATCTCTTCATCGACTCCTCGAATCGTCCCTCTCTCCCCCAGTTTTTAAGGAAGTCAGCCGGTTGCTTATTGGACTAAATTGTGGAAAACCACTTGAACCCTTGACAATAGTAGAAACCGCCAAAGGGTTGTCCTCACAACACGATTTTGATATTCAGGCATTCAGCTTTCA...

Protein

Download Protein FASTA

417 aa · LXL04_001457|LXL04_001457|OH1004|PROTEIN

MEKKEEVSKEHGNSEAASRTLSDGSICGFESLHRLLESSLSPPVFKEVSRLLIGLNCGKPLEPLTIVETAKGLSSQHDFDIQAFSFQADKELLRESRIVRVGLIQNSISLPTTAPFRDQKQAIFQKLKPIIDAAGSSGVNILCLQEAWTMPFAFCTREKRWCEFAEPADGESTQFLQVFARKYNMVIVSPILERDLKHGETIWNTAVIIGNNGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETVYGKIGVNICYG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_001457`
TK1151 ID	TkA01G533900
OH-1004 ID	LXL04_001457
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_001457

Location Chr01:27165033-27167093 (+)

Description Similar to PYD3: Beta-ureidopropionase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g64370`	Catalyzes a late step in pyrimidine degradation.	Characterization of plant beta-ureidopropionase and functional overexpression in Escherichia coli.2001 · DOI: 10.1104/pp.125.2.1001 A functional analysis of the pyrimidine catabolic pathway in Arabidopsis.2009 · DOI: 10.1111/j.1469-8137.2009.02843.x

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_001457 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006212 uracil catabolic process Biological Process

GO:0019482 beta-alanine metabolic process Biological Process

GO:0033396 beta-alanine biosynthetic process via 3-ureidopropionate Biological Process

GO:0043562 cellular response to nitrogen levels Biological Process

GO:0046135 pyrimidine nucleoside catabolic process Biological Process

GO:0051260 protein homooligomerization Biological Process

GO:0051289 protein homotetramerization Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0045335 phagocytic vesicle Cellular Component

GO:0070062 extracellular exosome Cellular Component

GO:0003837 beta-ureidopropionase activity Molecular Function

KEGG gene cross-reference

ath:AT5G64370

ddi:DDB_G0274123

hsa:51733

mmu:103149

pon:100172385

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.693

Rank 1 · LXL04_001457 · OH-1004

Nucleus0.342

Rank 2 · LXL04_001457 · OH-1004

Mitochondrion0.079

Rank 3 · LXL04_001457 · OH-1004

Peroxisome0.070

Rank 4 · LXL04_001457 · OH-1004

Cell membrane0.061

Rank 5 · LXL04_001457 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00795.28CN_hydrolase101-376 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_001457	`PF00795.28`	CN_hydrolase	101	376	2.3e-57	195.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8H183`	Arabidopsis thaliana	Beta-ureidopropionase	82.071%	Swiss-Prot	strong database homology

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