LXL04_001420 | RubberDandelionOmics

Gene overview

LXL04_001420

Reference: OH-1004 Chr: Chr01 Coordinates: 25948441-25949188 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

495 bp · LXL04_001420|LXL04_001420|OH1004|cDNA

ATGAGGTTGGAAAAATGCTGGTTTTGTTCCTCCACAGTATACCCTGGACATGGTATTCAATTTGTACGAAATGATGCAAAGATCTTTAGATTTTGTCGATCAAAATGCCACAAGAACTTTAAAATGAAGAGGAATCCTCGCAAGGTCAAATGGACCAAAGCTTACAGACGTTTACATGGCAAGGACATGACTCAGGATTCGACATTTGAGTTTGAGAGGAAGAGGAACAGGCCGGAGAGGTATGACAGGAACCTCACAGA...

CDS

Download CDS FASTA

495 bp · LXL04_001420|LXL04_001420|OH1004|CDS

ATGAGGTTGGAAAAATGCTGGTTTTGTTCCTCCACAGTATACCCTGGACATGGTATTCAATTTGTACGAAATGATGCAAAGATCTTTAGATTTTGTCGATCAAAATGCCACAAGAACTTTAAAATGAAGAGGAATCCTCGCAAGGTCAAATGGACCAAAGCTTACAGACGTTTACATGGCAAGGACATGACTCAGGATTCGACATTTGAGTTTGAGAGGAAGAGGAACAGGCCGGAGAGGTATGACAGGAACCTCACAGA...

Protein

Download Protein FASTA

164 aa · LXL04_001420|LXL04_001420|OH1004|PROTEIN

MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLTENTLKAIKTIDKVRFRREETHHKNRMKGKAAKERKEARKEHDQQLHMVKAPGAKESTATTAQVKVNVQHESADNRMEE

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_001420`
TK1151 ID	TkA01G539190
OH-1004 ID	LXL04_001420
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_001420

Location Chr01:25948441-25949188 (-)

Description Similar to At2g44860: Probable ribosome biogenesis protein RLP24

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g44860`	Involved in the biogenesis of the 60S ribosomal subunit.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_001420 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0042273 ribosomal large subunit biogenesis Biological Process

GO:1902626 assembly of large subunit precursor of preribosome Biological Process

GO:0005634 nucleus Cellular Component

GO:0005654 nucleoplasm Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0022625 cytosolic large ribosomal subunit Cellular Component

GO:0030684 preribosome Cellular Component

GO:0030687 preribosome, large subunit precursor Cellular Component

GO:0003735 structural constituent of ribosome Molecular Function

KEGG gene cross-reference

ath:AT2G44860

ddi:DDB_G0272789

mmu:225215

rno:363099

spo:2541855

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.365

Rank 1 · LXL04_001420 · OH-1004

Nucleus0.264

Rank 2 · LXL04_001420 · OH-1004

Mitochondrion0.183

Rank 3 · LXL04_001420 · OH-1004

Endoplasmic reticulum0.013

Rank 4 · LXL04_001420 · OH-1004

Cell membrane0.007

Rank 5 · LXL04_001420 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01246.27Ribosomal_L24e1-65 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_001420	`PF01246.27`	Ribosomal_L24e	1	65	3.2e-34	117.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O22165`	Arabidopsis thaliana	Probable ribosome biogenesis protein RLP24	69.182%	Swiss-Prot	strong database homology

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