LXL04_001228 | RubberDandelionOmics

Gene overview

LXL04_001228

Reference: OH-1004 Chr: Chr01 Coordinates: 22400393-22402187 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1062 bp · LXL04_001228|LXL04_001228|OH1004|cDNA

ATGAATACCAAACAAAGAGAGACATACTTATATGTAGGGGTGGGCAAGATTTGCAAGTacctggaactggaactggaactggtggGATCCGGCGGttctggaactggaactggtaTGACCAAGTCCGGTTCCAAATCCAAAAATTCAGGATCTGGTCGGACCAAATCCAAATCCAATTCCAAAAATATAGGATCTGGTACCCACCGGGTACCTGGTATCtgGTCGCTTCTCCATCGCCGCAAGTCCGCAGCTTCACGTCT...

CDS

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1062 bp · LXL04_001228|LXL04_001228|OH1004|CDS

ATGAATACCAAACAAAGAGAGACATACTTATATGTAGGGGTGGGCAAGATTTGCAAGTACCTGGAACTGGAACTGGAACTGGTGGGATCCGGCGGTTCTGGAACTGGAACTGGTATGACCAAGTCCGGTTCCAAATCCAAAAATTCAGGATCTGGTCGGACCAAATCCAAATCCAATTCCAAAAATATAGGATCTGGTACCCACCGGGTACCTGGTATCTGGTCGCTTCTCCATCGCCGCAAGTCCGCAGCTTCACGTCT...

Protein

Download Protein FASTA

353 aa · LXL04_001228|LXL04_001228|OH1004|PROTEIN

MNTKQRETYLYVGVGKICKYLELELELVGSGGSGTGTGMTKSGSKSKNSGSGRTKSKSNSKNIGSGTHRVPGIWSLLHRRKSAASRLQSVSPSIAICGSVMEEQPIDRESEVEQQKDPEVKDKRKVEVWHKFDVGRDPKTHKITKASCKFCSIDLKVTTNTGTSSMLKHLKSCNGHPNNIDSRQPKISMFKSSQSEGTTVSKWEFNQASTRQALTKMIVIDEQPFSYVERAGFRLFCSVAVPQFSLPSRYTVAKDIGKLY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_001228`
TK1151 ID	TkA08G119710
OH-1004 ID	LXL04_001228
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	91.900
Protein coverage (%)	TK1151 30.833 / OH-1004 10.482 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_001228

Location Chr01:22400393-22402187 (-)

Description Similar to Putative AC transposase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g42170`	Transposase-like protein that is essential for plant growth and development.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0518400`	Transposase-like protein that is essential for plant growth and development.	No verified direct reference in this release
`Os05g0583200`	Transposase-like protein that is essential for plant growth and development.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_001228 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006310 DNA recombination Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0009791 post-embryonic development Biological Process

GO:0032196 transposition Biological Process

GO:0005634 nucleus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0003677 DNA binding Molecular Function

GO:0008270 zinc ion binding Molecular Function

GO:0046983 protein dimerization activity Molecular Function

KEGG gene cross-reference

ath:AT3G42170

dosa:Os01g0518400

dosa:Os05g0583200

osa:4339741

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.887

Rank 1 · LXL04_001228 · OH-1004

Cytoplasm0.174

Rank 2 · LXL04_001228 · OH-1004

Mitochondrion0.030

Rank 3 · LXL04_001228 · OH-1004

Cell membrane0.024

Rank 4 · LXL04_001228 · OH-1004

Endoplasmic reticulum0.018

Rank 5 · LXL04_001228 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9M2N5`	Arabidopsis thaliana	Zinc finger BED domain-containing protein DAYSLEEPER	27.315%	Swiss-Prot	weak database homology
`Q0JMB2`	Oryza sativa subsp. japonica	Zinc finger BED domain-containing protein RICESLEEPER 4	26.590%	Swiss-Prot	weak database homology
`Q75HY5`	Oryza sativa subsp. japonica	Zinc finger BED domain-containing protein RICESLEEPER 3	24.176%	Swiss-Prot	weak database homology

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