Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1482 bp · LXL04_001224|LXL04_001224|OH1004|cDNA
ATGACACCAACAAGAAAAGCAACGGGAGACCGCAAAAGCAGTGGTACAACTTTTTGTGCACGCAACTGCGACACCATTCCAGCCTTCGTCTTCATAACCAGAAAAACATGGATATATTTTCTTCTTTCGGATCATCTTCCTCGCATTTCGATTTTTATTGATTTTCATTTTATCTCCTCCTTTCTCCATACGATCGGAAATTTCAATTTTTCACCAAATCAACGAGATTTATATGGAGAAGGCTTGTATTCTATGTTTTT...
1482 bp · LXL04_001224|LXL04_001224|OH1004|CDS
ATGACACCAACAAGAAAAGCAACGGGAGACCGCAAAAGCAGTGGTACAACTTTTTGTGCACGCAACTGCGACACCATTCCAGCCTTCGTCTTCATAACCAGAAAAACATGGATATATTTTCTTCTTTCGGATCATCTTCCTCGCATTTCGATTTTTATTGATTTTCATTTTATCTCCTCCTTTCTCCATACGATCGGAAATTTCAATTTTTCACCAAATCAACGAGATTTATATGGAGAAGGCTTGTATTCTATGTTTTT...
Protein
Download Protein FASTA493 aa · LXL04_001224|LXL04_001224|OH1004|PROTEIN
MTPTRKATGDRKSSGTTFCARNCDTIPAFVFITRKTWIYFLLSDHLPRISIFIDFHFISSFLHTIGNFNFSPNQRDLYGEGLYSMFLTSLRQKQKRELEKLTLASQPIKTLRLCTLAVLQHLSSSFVYILAHGCLLVLLVAAIAGVGVFLVSDDGPRRKQVEELVEYLRFGLWWMALGVASSIGLGSGLHTFVLYLGPHIAFFTMKALQCGRVDIKSAPYDTIQFNRNPTWLKKDCSEFGPPLFSSLDGPPEVPLTSILP...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_001224 |
|---|---|
| TK1151 ID | TkA01G553830 |
| OH-1004 ID | LXL04_001224 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 99.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 82.961Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_001224 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:22276771-22279260 (+) | |||||||||
| Description | Similar to KMS1: Vacuole membrane protein KMS1 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0000045 autophagosome assembly Biological Process GO:0006914 autophagy Biological Process GO:0007030 Golgi organization Biological Process GO:0010256 endomembrane system organization Biological Process GO:0016192 vesicle-mediated transport Biological Process GO:0016236 macroautophagy Biological Process GO:0016240 autophagosome membrane docking Biological Process GO:0034329 cell junction assembly Biological Process GO:0042953 lipoprotein transport Biological Process GO:0098609 cell-cell adhesion Biological Process GO:0140056 organelle localization by membrane tethering Biological Process GO:1901896 positive regulation of ATPase-coupled calcium transmembrane transporter activity Biological Process | |||||||||
| KEGG gene cross-reference | ath:AT1G05360 ath:AT4G14950 cel:CELE_Y37D8A.22 rno:192129 xla:432249 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF28607.1KMS1_N85-182 aaPF09335.17VTT_dom272-368 aaPF27639.1VMP1_C445-479 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_001224 | PF28607.1 | KMS1_N | 85 | 182 | 4e-35 | 120.8 |
| LXL04_001224 | PF09335.17 | VTT_dom | 272 | 368 | 1.1e-06 | 29.8 |
| LXL04_001224 | PF27639.1 | VMP1_C | 445 | 479 | 8.4e-15 | 54.8 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.