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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_001128
Reference: OH-1004 Chr: Chr01 Coordinates: 20765105-20766877 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1182 bp · LXL04_001128|LXL04_001128|OH1004|cDNA

ATGGAGCTGTACGGACGGAGCACAGGGAGAAACGGGTCACAGCCGGATCATAACCAACAACCCGAATGGGTACAGCCGGGGACGGAGACGGGACTCGAAGAATCGATGAGGCGGTTGGGGTTGTGGGGTGGAACTGGAAGAGTAGGAGAATTTTATCCGGAGCGACCTGGAACTGCGGATTGTGCTTACTATATGAGAACTGGGACATGTGGATATGGTAGCAAGTGCAGATATAATCACCCTCCAGATCGTAGTAACTT...

CDS

Download CDS FASTA

1182 bp · LXL04_001128|LXL04_001128|OH1004|CDS

ATGGAGCTGTACGGACGGAGCACAGGGAGAAACGGGTCACAGCCGGATCATAACCAACAACCCGAATGGGTACAGCCGGGGACGGAGACGGGACTCGAAGAATCGATGAGGCGGTTGGGGTTGTGGGGTGGAACTGGAAGAGTAGGAGAATTTTATCCGGAGCGACCTGGAACTGCGGATTGTGCTTACTATATGAGAACTGGGACATGTGGATATGGTAGCAAGTGCAGATATAATCACCCTCCAGATCGTAGTAACTT...

Protein

Download Protein FASTA

393 aa · LXL04_001128|LXL04_001128|OH1004|PROTEIN

MELYGRSTGRNGSQPDHNQQPEWVQPGTETGLEESMRRLGLWGGTGRVGEFYPERPGTADCAYYMRTGTCGYGSKCRYNHPPDRSNLAGGAARSAGGGAYPERPGEPPCQYYLRTGTCKFGASCKFNHPRHAGGSLSNVPLNTYGYPLRPEEKECSYYLKTGQCKFGITCKFHHPQPSGESARPFYSTVQSPSPEQYPAGAAYRVARPPLVPGSYPPGAYGPILLSPGMVPWSPYSGRVSPVLSPGAQPFAGHFRPLPPP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_001128
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_001128
LocationChr01:20765105-20766877 (-)
DescriptionSimilar to At2g47850: Zinc finger CCCH domain-containing protein 32
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g47850 Zinc finger CCCH domain-containing protein 32. No verified direct reference in this release
At5g18550 Zinc finger CCCH domain-containing protein 58. No verified direct reference in this release
At3g06410 Zinc finger CCCH domain-containing protein 34. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0258700 Zinc finger CCCH domain-containing protein 6. No verified direct reference in this release
Os01g0257400 Zinc finger CCCH domain-containing protein 5. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_001128 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0005634 nucleus Cellular Component
GO:0003677 DNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT2G47850
ath:AT3G06410
ath:AT5G18550
dosa:Os01g0258700
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.652
Rank 1 · LXL04_001128 · OH-1004
Cytoplasm0.463
Rank 2 · LXL04_001128 · OH-1004
Cell membrane0.047
Rank 3 · LXL04_001128 · OH-1004
Endoplasmic reticulum0.034
Rank 4 · LXL04_001128 · OH-1004
Mitochondrion0.022
Rank 5 · LXL04_001128 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00642.31zf-CCCH56-82 aa
PF18345.8zf_CCCH_461-80 aa
PF00642.31zf-CCCH104-130 aa
PF18044.8zf-CCCH_4107-129 aa
PF14608.13zf-CCCH_2108-129 aa
PF18345.8zf_CCCH_4109-128 aa
PF00642.31zf-CCCH152-176 aa
PF00642.31zf-CCCH275-301 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_001128PF00642.31zf-CCCH56824e-51170.7
LXL04_001128PF18345.8zf_CCCH_461801.3e-1867.2
LXL04_001128PF00642.31zf-CCCH1041304e-51170.7
LXL04_001128PF18044.8zf-CCCH_41071292.8e-1659.6
LXL04_001128PF14608.13zf-CCCH_21081291.9e-1866.8
LXL04_001128PF18345.8zf_CCCH_41091281.3e-1867.2
LXL04_001128PF00642.31zf-CCCH1521764e-51170.7
LXL04_001128PF00642.31zf-CCCH2753014e-51170.7
LXL04_001128PF14608.13zf-CCCH_22803001.9e-1866.8
LXL04_001128PF00642.31zf-CCCH3223464e-51170.7
LXL04_001128PF25585.2zf-CCCH_DUS3L3263458.7e-1761.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q84W91Arabidopsis thalianaZinc finger CCCH domain-containing protein 3259.126%Swiss-Protstrong database homology
Q6NPN3Arabidopsis thalianaZinc finger CCCH domain-containing protein 5851.181%Swiss-Protstrong database homology
Q9SQU4Arabidopsis thalianaZinc finger CCCH domain-containing protein 3450.260%Swiss-Protstrong database homology
Q5NAW2Oryza sativa subsp. japonicaZinc finger CCCH domain-containing protein 650.139%Swiss-Protstrong database homology
Q5NAV3Oryza sativa subsp. japonicaZinc finger CCCH domain-containing protein 550.806%Swiss-Protstrong database homology

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