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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_001070
Reference: OH-1004 Chr: Chr01 Coordinates: 19679141-19682797 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3132 bp · LXL04_001070|LXL04_001070|OH1004|cDNA

ATGGTTAGCCAAGCCACGTATACTTGTTTAGGTGATCCTAGTGTCGGTAGTTGCTCTGAGCAAGAGCATCTTGCTCTTCTCAAGTTCAAACACGGAGTCAGATTCGATCCGTCTGGAATTTTGTCATCATGGGTTGGCAATGACTGCTGCATGTGGGAAGGAATCCAATGTGATATTGTCACTGGAAATGTGGAAAGCCTTTATCTCAGAGGAGATGATGAGGGCTACTTGGTTGTTAATGAGACGAACTTTTCTTTGGC...

CDS

Download CDS FASTA

3132 bp · LXL04_001070|LXL04_001070|OH1004|CDS

ATGGTTAGCCAAGCCACGTATACTTGTTTAGGTGATCCTAGTGTCGGTAGTTGCTCTGAGCAAGAGCATCTTGCTCTTCTCAAGTTCAAACACGGAGTCAGATTCGATCCGTCTGGAATTTTGTCATCATGGGTTGGCAATGACTGCTGCATGTGGGAAGGAATCCAATGTGATATTGTCACTGGAAATGTGGAAAGCCTTTATCTCAGAGGAGATGATGAGGGCTACTTGGTTGTTAATGAGACGAACTTTTCTTTGGC...

Protein

Download Protein FASTA

1043 aa · LXL04_001070|LXL04_001070|OH1004|PROTEIN

MVSQATYTCLGDPSVGSCSEQEHLALLKFKHGVRFDPSGILSSWVGNDCCMWEGIQCDIVTGNVESLYLRGDDEGYLVVNETNFSLAELSHLKYLDLSGNYFGWSRIPDLIGSLKELTYLNLSHAAFQGIIPPYIGNLSNLKVLDLSLNDELIVDDMTWTSGLLSLEHLDLSSVNLGGTPNKDMVFYMIPSLYDLSLSRCGLTNADIGPFLNSSIILPNIKRLDLSYNFFEGPLPGFFQNMTSLTFLDISSFNLSLAWNF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_001070
TK1151 IDTkA01G563400
OH-1004 IDLXL04_001070
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)96.800
Protein coverage (%)TK1151 76.543 / OH-1004 11.889
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_001070
LocationChr01:19679141-19682797 (-)
DescriptionSimilar to EIX1: Receptor-like protein EIX1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g15080 Receptor-like protein 19. No verified direct reference in this release
At4g04220 Receptor-like protein 46. No verified direct reference in this release
At4g13920 Receptor-like protein 50. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_001070 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0002220 innate immune response activating cell surface receptor signaling pathway Biological Process
GO:0007165 signal transduction Biological Process
GO:0050832 defense response to fungus Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005886 plasma membrane Cellular Component
KEGG gene cross-reference
ath:AT2G15080
sly:543900
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.860
Rank 1 · LXL04_001070 · OH-1004
Endoplasmic reticulum0.088
Rank 2 · LXL04_001070 · OH-1004
Cytoplasm0.058
Rank 3 · LXL04_001070 · OH-1004
Nucleus0.045
Rank 4 · LXL04_001070 · OH-1004
Lysosome / Vacuole0.022
Rank 5 · LXL04_001070 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08263.18LRRNT_220-58 aa
PF23598.2LRR_1486-174 aa
PF13855.13LRR_8116-173 aa
PF13855.13LRR_8190-251 aa
PF13855.13LRR_8297-336 aa
PF23598.2LRR_14410-602 aa
PF13855.13LRR_8480-539 aa
PF23598.2LRR_14676-814 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_001070PF08263.18LRRNT_220581.6e-1041.8
LXL04_001070PF23598.2LRR_14861744.1e-36125.2
LXL04_001070PF13855.13LRR_81161734.9e-62206.3
LXL04_001070PF13855.13LRR_81902514.9e-62206.3
LXL04_001070PF13855.13LRR_82973364.9e-62206.3
LXL04_001070PF23598.2LRR_144106024.1e-36125.2
LXL04_001070PF13855.13LRR_84805394.9e-62206.3
LXL04_001070PF23598.2LRR_146768144.1e-36125.2
LXL04_001070PF13855.13LRR_86847204.9e-62206.3
LXL04_001070PF13855.13LRR_86867434.9e-62206.3
LXL04_001070PF13855.13LRR_87808294.9e-62206.3
LXL04_001070PF23598.2LRR_148799474.1e-36125.2
LXL04_001070PF13855.13LRR_88929504.9e-62206.3
LXL04_001070PF12799.14LRR_48959266.5e-35119.1
LXL04_001070PF12799.14LRR_49149546.5e-35119.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9ZUK3Arabidopsis thalianaReceptor-like protein 1931.375%Swiss-Protmoderate database homology
F4JGB6Arabidopsis thalianaReceptor-like protein 4632.840%Swiss-Protmoderate database homology
Q93YT3Arabidopsis thalianaReceptor-like protein 5031.829%Swiss-Protmoderate database homology

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