Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2388 bp · LXL04_000992|LXL04_000992|OH1004|cDNA
ATGTCATCAAACACATCAAGCACATCAAGTACAAATTCTGAAGAAGAGACATTGATCGATTACGCTGCAGAGGTAGCTGTTAATTTGGCTAATACGTTATCACAAGGAGAAGGGAGCAATGCTATTCGAAGAAATAGACGACATATCACAAGGGGACGGGATCAAGGGCAAAATCGTCTGATGGAATATTATTTTAACGATAATGCTATCTATCAGGTTTACTTTCGGAGGCGGTTCAGaatgcataaacctttgttTTT...
2388 bp · LXL04_000992|LXL04_000992|OH1004|CDS
ATGTCATCAAACACATCAAGCACATCAAGTACAAATTCTGAAGAAGAGACATTGATCGATTACGCTGCAGAGGTAGCTGTTAATTTGGCTAATACGTTATCACAAGGAGAAGGGAGCAATGCTATTCGAAGAAATAGACGACATATCACAAGGGGACGGGATCAAGGGCAAAATCGTCTGATGGAATATTATTTTAACGATAATGCTATCTATCAGGTTTACTTTCGGAGGCGGTTCAGAATGCATAAACCTTTGTTTTT...
Protein
Download Protein FASTA795 aa · LXL04_000992|LXL04_000992|OH1004|PROTEIN
MSSNTSSTSSTNSEEETLIDYAAEVAVNLANTLSQGEGSNAIRRNRRHITRGRDQGQNRLMEYYFNDNAIYQVYFRRRFRMHKPLFFRIVEGVCSVCESFTQRPDARGTFGFTPIQKCTAALRMLAYGTHPDSLDENFRMSERTARDTLIHFCDSILQLYAPRYLRYPTPNDVKQLYDHHANVHGSMSKTLWWIAFFLISVWLSSSRVFAIDNFNQAFPIVEPDPGHTKLRLSTEGLEAIRRITNPIAAVAVIGPYRSGK...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_000992 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_000992 |
|---|---|
| Location | Chr01:17947910-17954069 (-) |
| Description | Similar to GBP7: Guanylate-binding protein 7 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0001818 negative regulation of cytokine production Biological Process GO:0002218 activation of innate immune response Biological Process GO:0006605 protein targeting Biological Process GO:0009617 response to bacterium Biological Process GO:0032480 negative regulation of type I interferon production Biological Process GO:0032731 positive regulation of interleukin-1 beta production Biological Process GO:0032741 positive regulation of interleukin-18 production Biological Process GO:0034067 protein localization to Golgi apparatus Biological Process GO:0034345 negative regulation of type III interferon production Biological Process GO:0035458 cellular response to interferon-beta Biological Process GO:0042742 defense response to bacterium Biological Process GO:0042832 defense response to protozoan Biological Process |
| KEGG gene cross-reference | hsa:115361 hsa:115362 hsa:388646 mmu:229900 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF28509.1DUF841856-93 aaPF02263.26GBP229-477 aaPF02841.21GBP_C488-617 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_000992 | PF28509.1 | DUF8418 | 56 | 93 | 1e-12 | 48.3 |
| LXL04_000992 | PF02263.26 | GBP | 229 | 477 | 9.8e-36 | 124.0 |
| LXL04_000992 | PF02841.21 | GBP_C | 488 | 617 | 6.7e-10 | 39.5 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.