Gene Card
Gene overview
cDNA / CDS / Protein Sequences
822 bp · LXL04_000952|LXL04_000952|OH1004|cDNA
atgaCATTCCGTAGCAGTTTTGCTACGAAATTATTGGACTTAAGCGGGAATAAAGTGAGCCAAAAGACACCAAAAATTTCAATTCCATCTCATTTTGAGTTTTGCCCTAGCACTCTCCCATCTGCCCTAGTGCCCTCGCAGTCAGTCTCGCACACACACGCCGCTCTCCAGTCTCCAACTCTCAGCGACACGCCGCTCTCCGACCTCGCCTCCCCTGACTTCGCCTCCCCCAACCTCGCTCAGACTCCTCCGACATCGGG...
822 bp · LXL04_000952|LXL04_000952|OH1004|CDS
ATGACATTCCGTAGCAGTTTTGCTACGAAATTATTGGACTTAAGCGGGAATAAAGTGAGCCAAAAGACACCAAAAATTTCAATTCCATCTCATTTTGAGTTTTGCCCTAGCACTCTCCCATCTGCCCTAGTGCCCTCGCAGTCAGTCTCGCACACACACGCCGCTCTCCAGTCTCCAACTCTCAGCGACACGCCGCTCTCCGACCTCGCCTCCCCTGACTTCGCCTCCCCCAACCTCGCTCAGACTCCTCCGACATCGGG...
Protein
Download Protein FASTA273 aa · LXL04_000952|LXL04_000952|OH1004|PROTEIN
MTFRSSFATKLLDLSGNKVSQKTPKISIPSHFEFCPSTLPSALVPSQSVSHTHAALQSPTLSDTPLSDLASPDFASPNLAQTPPTSGSPLSDLAQTPRRRFPLIVANHQLRLLRNRLPALPSPPCSDVPSLLRRPLPVPYLFLDALRQATAITTCNSPHLLLIFDSFYLQFSVFLIFLRILSSDLVVYGFRKKIQISEITATAHREAEGRCNISAGEKEPHRLLQAADKTLKTMAIEFAKSQCYVDIASISNMGCSGLHL...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_000952 |
|---|---|
| TK1151 ID | TkAUNG069490 |
| OH-1004 ID | LXL04_000952 |
| Relationship / confidence | Multi Candidate From Tk1151 / Complex relationship |
| Protein identity (%) | 88.400 |
| Protein coverage (%) | TK1151 97.351 / OH-1004 56.777Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_000952 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:17323935-17325515 (+) | |||||||||
| Description | Similar to At4g32640: Protein transport protein Sec24-like At4g32640 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006886 intracellular protein transport Biological Process GO:0006979 response to oxidative stress Biological Process GO:0090110 COPII-coated vesicle cargo loading Biological Process GO:0000139 Golgi membrane Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005789 endoplasmic reticulum membrane Cellular Component GO:0005886 plasma membrane Cellular Component GO:0010494 cytoplasmic stress granule Cellular Component GO:0030127 COPII vesicle coat Cellular Component GO:0070971 endoplasmic reticulum exit site Cellular Component GO:0000149 SNARE binding Molecular Function GO:0008270 zinc ion binding Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT3G44340 ath:AT4G32640 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
No result was found for this query.
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.