LXL04_000892 | RubberDandelionOmics

Gene overview

LXL04_000892

Reference: OH-1004 Chr: Chr01 Coordinates: 16351632-16353521 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1890 bp · LXL04_000892|LXL04_000892|OH1004|cDNA

ATGAGACGCCGTTCGCCGGTGACTCCTTCATCGGATCATATGGAAAAGGGGACTAATAAGTCCCAACACTCTCGTCTCTGTGTATTAGGGTTACTCTGTGCCTTCTTTTGGGGCTTCTTATTGTACTTCCATTTTGTCATTATTGGTGGTAGATCTTTTCAAGCTACTTCCATTTCATCCGAGTCTACCACCCTCGAATCTCTCCCCGCTATTCGTCCAATTACCACTAGTCGTCCAATTCCGGCGGTTGATATCGACCG...

CDS

Download CDS FASTA

1890 bp · LXL04_000892|LXL04_000892|OH1004|CDS

ATGAGACGCCGTTCGCCGGTGACTCCTTCATCGGATCATATGGAAAAGGGGACTAATAAGTCCCAACACTCTCGTCTCTGTGTATTAGGGTTACTCTGTGCCTTCTTTTGGGGCTTCTTATTGTACTTCCATTTTGTCATTATTGGTGGTAGATCTTTTCAAGCTACTTCCATTTCATCCGAGTCTACCACCCTCGAATCTCTCCCCGCTATTCGTCCAATTACCACTAGTCGTCCAATTCCGGCGGTTGATATCGACCG...

Protein

Download Protein FASTA

629 aa · LXL04_000892|LXL04_000892|OH1004|PROTEIN

MRRRSPVTPSSDHMEKGTNKSQHSRLCVLGLLCAFFWGFLLYFHFVIIGGRSFQATSISSESTTLESLPAIRPITTSRPIPAVDIDRVANYDKSDESRDLIVAQPKTPKPEPVTEPETDNLNQQEHFQSVTPPPKPPQPDSSIEQKNNDPVFPFTKALRTAENKSDPCGGRYVYVHDLPPRFNEDMLKQCRSLSKWTNMCKFTTNAGLGPPLENTEGVFSDNGWYATNQFAVDVIFSNRMKQYECLTKDSSLAAAIFVPF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_000892`
TK1151 ID	TkA01G578470
OH-1004 ID	LXL04_000892
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.500
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_000892

Location Chr01:16351632-16353521 (+)

Description Similar to MUR3: Xyloglucan galactosyltransferase MUR3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g20370`	Involved in the attachment of the Gal residue on the third xylosyl unit within the XXXG core structure of xyloglucan, the principal glycan that interlaces the cellulose microfibrils in plant cell wall.	The MUR3 gene of Arabidopsis encodes a xyloglucan galactosyltransferase that is evolutionarily related to animal exostosins.2003 · DOI: 10.1105/tpc.009837 KATAMARI1/MURUS3 Is a novel golgi membrane protein that is required for endomembrane organization in Arabidopsis.2005 · DOI: 10.1105/tpc.105.031930 A bi-functional xyloglucan galactosyltransferase is an indispensable salt stress tolerance determinant in Arabidopsis.2013 · DOI: 10.1093/mp/sst062 Protein-protein interactions among xyloglucan-synthesizing enzymes and formation of Golgi-localized multiprotein complexes.2015 · DOI: 10.1093/pcp/pcu161
`At2g29040`	Functions in xyloglucan synthesis by adding side chains to the xylosylated glucan backbone.	No verified direct reference in this release
`At4g13990`	Functions in xyloglucan synthesis by adding side chains to the xylosylated glucan backbone.	No verified direct reference in this release
`At2g32750`	Functions in xyloglucan synthesis by adding side chains to the xylosylated glucan backbone.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0144800`	Involved in the attachment of the Gal residue on the third xylosyl unit within the XXXG core structure of xyloglucan, the principal glycan that interlaces the cellulose microfibrils in plant cell wall.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000892 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009101 glycoprotein biosynthetic process Biological Process

GO:0009826 unidimensional cell growth Biological Process

GO:0009863 salicylic acid mediated signaling pathway Biological Process

GO:0009969 xyloglucan biosynthetic process Biological Process

GO:0010256 endomembrane system organization Biological Process

GO:0042353 fucose biosynthetic process Biological Process

GO:0000138 Golgi trans cisterna Cellular Component

GO:0000139 Golgi membrane Cellular Component

GO:0005768 endosome Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005802 trans-Golgi network Cellular Component

GO:0009505 plant-type cell wall Cellular Component

KEGG gene cross-reference

ath:AT2G20370

ath:AT2G32750

ath:AT4G13990

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.858

Rank 1 · LXL04_000892 · OH-1004

Endoplasmic reticulum0.081

Rank 2 · LXL04_000892 · OH-1004

Cell membrane0.048

Rank 3 · LXL04_000892 · OH-1004

Cytoplasm0.042

Rank 4 · LXL04_000892 · OH-1004

Extracellular0.036

Rank 5 · LXL04_000892 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03016.21Exostosin_GT47168-505 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_000892	`PF03016.21`	Exostosin_GT47	168	505	2e-90	303.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q7XJ98`	Arabidopsis thaliana	Xyloglucan galactosyltransferase MUR3	69.291%	Swiss-Prot	strong database homology
`O81072`	Arabidopsis thaliana	Probable xyloglucan galactosyltransferase GT11	57.050%	Swiss-Prot	strong database homology
`Q84R16`	Arabidopsis thaliana	Probable xyloglucan galactosyltransferase GT14	51.675%	Swiss-Prot	moderate database homology
`O48842`	Arabidopsis thaliana	Probable xyloglucan galactosyltransferase GT12	49.881%	Swiss-Prot	moderate database homology
`Q8H038`	Oryza sativa subsp. japonica	Xyloglucan galactosyltransferase KATAMARI1 homolog	64.658%	Swiss-Prot	strong database homology

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