LXL04_000850 | RubberDandelionOmics

Gene overview

LXL04_000850

Reference: OH-1004 Chr: Chr01 Coordinates: 15642769-15644713 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1275 bp · LXL04_000850|LXL04_000850|OH1004|cDNA

ATGGGGTGTTTTTCATCAAAAGAAAAGATACGATCAGGGAGACATGGAGGCCAAAGAGGGAGAAGCCCGAATGCACCTTCCCGTCAACCTCAGAATCAACGAAGGGTTTCAGCAGAAGCGAAGCCTGGTTATAAACCTGCTCCCACCCCTACGAGAACAAGCAATGAACGTGTTAATAACCAATCTCCGGTGAAACCAGCAGCCGGCAGCAATATTGCAGCACAAACGTTCACTTTCCGGGAACTGGCAGCCGTAACAAA...

CDS

Download CDS FASTA

1275 bp · LXL04_000850|LXL04_000850|OH1004|CDS

ATGGGGTGTTTTTCATCAAAAGAAAAGATACGATCAGGGAGACATGGAGGCCAAAGAGGGAGAAGCCCGAATGCACCTTCCCGTCAACCTCAGAATCAACGAAGGGTTTCAGCAGAAGCGAAGCCTGGTTATAAACCTGCTCCCACCCCTACGAGAACAAGCAATGAACGTGTTAATAACCAATCTCCGGTGAAACCAGCAGCCGGCAGCAATATTGCAGCACAAACGTTCACTTTCCGGGAACTGGCAGCCGTAACAAA...

Protein

Download Protein FASTA

424 aa · LXL04_000850|LXL04_000850|OH1004|PROTEIN

MGCFSSKEKIRSGRHGGQRGRSPNAPSRQPQNQRRVSAEAKPGYKPAPTPTRTSNERVNNQSPVKPAAGSNIAAQTFTFRELAAVTKNFRQDSLIGEGGFGRVYKGKLGKTGQDVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMSAGSLEDHLLDLPRGKAPLPWYTRMKIALDAAKGLEYLHDKANPPVIYRDLKSSNILLDQDFNAKLSDFGLAKLGPVGDKTHVSSRVMGTYGYC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_000850`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_000850

Location Chr01:15642769-15644713 (-)

Description Similar to PBL26: Probable serine/threonine-protein kinase PBL26

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g07070`	May be involved in plant defense signaling.	No verified direct reference in this release
`At3g24790`	May be involved in plant defense signaling.	No verified direct reference in this release
`At5g18610`	May act as a receptor-like cytoplasmic kinase in chitin-induced immune signaling.	Selective regulation of the chitin-induced defense response by the Arabidopsis receptor-like cytoplasmic kinase PBL27.2014 · DOI: 10.1111/tpj.12535 The Arabidopsis CERK1-associated kinase PBL27 connects chitin perception to MAPK activation.2016 · DOI: 10.15252/embj.201694248
`At4g13190`	May be involved in plant defense signaling.	No verified direct reference in this release
`At5g02800`	Serine/threonine-protein kinase involved in the positive regulation of brassinosteroid (BR) signaling and plant growth.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000850 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006468 protein phosphorylation Biological Process

GO:0006952 defense response Biological Process

GO:0009742 brassinosteroid mediated signaling pathway Biological Process

GO:0010183 pollen tube guidance Biological Process

GO:0010483 pollen tube reception Biological Process

GO:0031349 positive regulation of defense response Biological Process

GO:0043410 positive regulation of MAPK cascade Biological Process

GO:0045087 innate immune response Biological Process

GO:0045088 regulation of innate immune response Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0071323 cellular response to chitin Biological Process

GO:1900150 regulation of defense response to fungus Biological Process

KEGG gene cross-reference

ath:AT3G07070

ath:AT3G24790

ath:AT4G13190

ath:AT5G02800

ath:AT5G18610

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.725

Rank 1 · LXL04_000850 · OH-1004

Cytoplasm0.244

Rank 2 · LXL04_000850 · OH-1004

Nucleus0.217

Rank 3 · LXL04_000850 · OH-1004

Endoplasmic reticulum0.038

Rank 4 · LXL04_000850 · OH-1004

Golgi apparatus0.028

Rank 5 · LXL04_000850 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase90-303 aa

PF07714.24PK_Tyr_Ser-Thr92-296 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_000850	`PF00069.32`	Pkinase	90	303	2.3e-46	159.0
LXL04_000850	`PF07714.24`	PK_Tyr_Ser-Thr	92	296	2.3e-46	158.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SFT7`	Arabidopsis thaliana	Probable serine/threonine-protein kinase PBL26	67.669%	Swiss-Prot	strong database homology
`Q9LRY1`	Arabidopsis thaliana	Probable serine/threonine-protein kinase PBL25	67.209%	Swiss-Prot	strong database homology
`Q1PDV6`	Arabidopsis thaliana	Serine/threonine-protein kinase PBL27	76.431%	Swiss-Prot	strong database homology
`Q1PE89`	Arabidopsis thaliana	Probable serine/threonine-protein kinase PBL24	65.229%	Swiss-Prot	strong database homology
`Q0WRY5`	Arabidopsis thaliana	Probable serine/threonine-protein kinase PBL7	73.401%	Swiss-Prot	strong database homology

JBrowse

View in Genome Browser

Gene Card