LXL04_000773 | RubberDandelionOmics

Gene overview

LXL04_000773

Reference: OH-1004 Chr: Chr01 Coordinates: 14142402-14143662 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1083 bp · LXL04_000773|LXL04_000773|OH1004|cDNA

ATGTGGATGGATGAAGTGTTAAATGGCAGTCCTATTAGAAGTGTAAATGCCTTTAGAATGCATCCGAATGTGTTCCTGCAACTATGTAGGGAACTTGAATTAAAATATGGATTAAAGTCAAGCAAAAACATGTCCAGTGTTGAAAAATTGGGGATATTCGTATATATTCTTGCAGTAGGTCTATCTAATAGAGATGTTGGGGAGCGATTTCAACGATCTGGAGATACAGTTAGCAGAGCATTTCATGAAGTTCTAGAGGC...

CDS

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1083 bp · LXL04_000773|LXL04_000773|OH1004|CDS

ATGTGGATGGATGAAGTGTTAAATGGCAGTCCTATTAGAAGTGTAAATGCCTTTAGAATGCATCCGAATGTGTTCCTGCAACTATGTAGGGAACTTGAATTAAAATATGGATTAAAGTCAAGCAAAAACATGTCCAGTGTTGAAAAATTGGGGATATTCGTATATATTCTTGCAGTAGGTCTATCTAATAGAGATGTTGGGGAGCGATTTCAACGATCTGGAGATACAGTTAGCAGAGCATTTCATGAAGTTCTAGAGGC...

Protein

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360 aa · LXL04_000773|LXL04_000773|OH1004|PROTEIN

MWMDEVLNGSPIRSVNAFRMHPNVFLQLCRELELKYGLKSSKNMSSVEKLGIFVYILAVGLSNRDVGERFQRSGDTVSRAFHEVLEAITARRKGFQGLACDIIRPKDPTFQSIPLQIKEDKRYMPYFKDCIGCIDGTHILACIPENEQLRYIGRKGVPTFNVMATCDFDMCFTFASVGWEGSAHDTRVFLHAINTPSMNFPKPPEGKYYLVDKGYPDRNRYMVPYSKIRYHQSQFQNEPPNNMQETFNRSHSSLRSCIER...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_000773`
TK1151 ID	TkA01G589330
OH-1004 ID	LXL04_000773
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	99.100
Protein coverage (%)	TK1151 41.923 / OH-1004 30.278 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_000773

Location Chr01:14142402-14143662 (+)

Description Similar to At3g55350: Protein ALP1-like

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g55350`	Transposase-derived protein that may have nuclease activity.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_000773 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000118 histone deacetylase complex Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0034451 centriolar satellite Cellular Component

GO:0004518 nuclease activity Molecular Function

GO:0016787 hydrolase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT3G55350

bta:514442

hsa:283254

mmu:241547

rno:690164

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.917

Rank 1 · LXL04_000773 · OH-1004

Cytoplasm0.194

Rank 2 · LXL04_000773 · OH-1004

Mitochondrion0.023

Rank 3 · LXL04_000773 · OH-1004

Cell membrane0.017

Rank 4 · LXL04_000773 · OH-1004

Endoplasmic reticulum0.011

Rank 5 · LXL04_000773 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF26138.1DUF80401-89 aa

PF04827.21Plant_tran127-298 aa

PF01609.28DDE_Tnp_1128-293 aa

PF13359.13DDE_Tnp_4134-295 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_000773	`PF26138.1`	DUF8040	1	89	6.5e-33	113.2
LXL04_000773	`PF04827.21`	Plant_tran	127	298	4e-08	33.8
LXL04_000773	`PF01609.28`	DDE_Tnp_1	128	293	4.4e-11	43.6
LXL04_000773	`PF13359.13`	DDE_Tnp_4	134	295	3.4e-28	99.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9M2U3`	Arabidopsis thaliana	Protein ALP1-like	22.601%	Swiss-Prot	weak database homology

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