LXL04_000712 | RubberDandelionOmics

Gene overview

LXL04_000712

Reference: OH-1004 Chr: Chr01 Coordinates: 13062815-13065331 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

846 bp · LXL04_000712|LXL04_000712|OH1004|cDNA

ATGGCAGAGGAAGAAACCCAAATTGAGATGAAGGAGGAAGCAGCTGATCTTGCACCTTTTGACCCTtcgaaaaagaagaagaaaaagaaggttGTTATCCATGATCCTGCTGAGGATCCTGTGGAACAATTATCAGAAAAAACTGAAAGCCTATCAGTTTCTGATGGTCTTGAGCCTACATTTACTGgtctgaagaagaagaaaaagaagccGGTGGAAACAATCCCTttggaagaagagaaagaaaatgATGGTGAAGA...

CDS

Download CDS FASTA

846 bp · LXL04_000712|LXL04_000712|OH1004|CDS

ATGGCAGAGGAAGAAACCCAAATTGAGATGAAGGAGGAAGCAGCTGATCTTGCACCTTTTGACCCTTCGAAAAAGAAGAAGAAAAAGAAGGTTGTTATCCATGATCCTGCTGAGGATCCTGTGGAACAATTATCAGAAAAAACTGAAAGCCTATCAGTTTCTGATGGTCTTGAGCCTACATTTACTGGTCTGAAGAAGAAGAAAAAGAAGCCGGTGGAAACAATCCCTTTGGAAGAAGAGAAAGAAAATGATGGTGAAGA...

Protein

Download Protein FASTA

281 aa · LXL04_000712|LXL04_000712|OH1004|PROTEIN

MAEEETQIEMKEEAADLAPFDPSKKKKKKKVVIHDPAEDPVEQLSEKTESLSVSDGLEPTFTGLKKKKKKPVETIPLEEEKENDGEDADYSSTFPLCFPVPSGEDDEGEGVVLQEQKLPWEGTDRDYIYEELLGRVFHILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKSMHRQPEHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICNGCKSPDTILSKENRLFFLRCEKCGSG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_000712`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_000712

Location Chr01:13062815-13065331 (-)

Description Similar to Eukaryotic translation initiation factor 2 subunit beta

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g20920`	Component of the eIF2 complex that functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_000712 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0001731 formation of translation preinitiation complex Biological Process

GO:0002183 cytoplasmic translational initiation Biological Process

GO:0006413 translational initiation Biological Process

GO:0006446 regulation of translational initiation Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005850 eukaryotic translation initiation factor 2 complex Cellular Component

GO:0009536 plastid Cellular Component

GO:0003723 RNA binding Molecular Function

GO:0003729 mRNA binding Molecular Function

GO:0003743 translation initiation factor activity Molecular Function

KEGG gene cross-reference

ath:AT5G20920

bta:520094

hsa:8894

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.767

Rank 1 · LXL04_000712 · OH-1004

Nucleus0.238

Rank 2 · LXL04_000712 · OH-1004

Cell membrane0.091

Rank 3 · LXL04_000712 · OH-1004

Endoplasmic reticulum0.084

Rank 4 · LXL04_000712 · OH-1004

Golgi apparatus0.066

Rank 5 · LXL04_000712 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01873.24eIF-5_eIF-2B150-259 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_000712	`PF01873.24`	eIF-5_eIF-2B	150	259	1e-40	139.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q41969`	Arabidopsis thaliana	Eukaryotic translation initiation factor 2 subunit beta	73.897%	Swiss-Prot	strong database homology

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