LXL04_000655 | RubberDandelionOmics

Gene overview

LXL04_000655

Reference: OH-1004 Chr: Chr01 Coordinates: 12117663-12119969 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

795 bp · LXL04_000655|LXL04_000655|OH1004|cDNA

ATGGGTTTCTTAAAGATCTGCCCAGATCCGACGCTCTTTCCGCAAGCAACAGCAACAGAGACAGTCATTACAACGGTTAGTTTATCTGGCATCACCATCGTCGTTGTTATCAATTTTCCGCTTAACTCTGTCGTTGTTTCAGGAGGAATGACCGAGCAAAAGATAGTTCAAAGGCAAAAAAAAACTCTAGCCAAGTGGTTAAAAGAGAGTATTCTGATATTAGGTCTCACATTCATCAAAATCGGCCAACAGTTTTCAAC...

CDS

Download CDS FASTA

795 bp · LXL04_000655|LXL04_000655|OH1004|CDS

ATGGGTTTCTTAAAGATCTGCCCAGATCCGACGCTCTTTCCGCAAGCAACAGCAACAGAGACAGTCATTACAACGGTTAGTTTATCTGGCATCACCATCGTCGTTGTTATCAATTTTCCGCTTAACTCTGTCGTTGTTTCAGGAGGAATGACCGAGCAAAAGATAGTTCAAAGGCAAAAAAAAACTCTAGCCAAGTGGTTAAAAGAGAGTATTCTGATATTAGGTCTCACATTCATCAAAATCGGCCAACAGTTTTCAAC...

Protein

Download Protein FASTA

264 aa · LXL04_000655|LXL04_000655|OH1004|PROTEIN

MGFLKICPDPTLFPQATATETVITTVSLSGITIVVVINFPLNSVVVSGGMTEQKIVQRQKKTLAKWLKESILILGLTFIKIGQQFSTKVDILAQKYTDISIIEEELGAPDNEVFDFFYFEPIVAASLRNQPKCKILHLQLHIPSLKLPNWVLIESDRDGTWNWQTIVIGASFLAFLLSAKHLDKKNKKLFWVFAIAPLISVIFSTLFVYITHAQKQESLVEIIGGGMGVSGGGGGVKWLWTSVVGESRSRVGCRGGYGYG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_000655`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_000655

Location Chr01:12117663-12119969 (+)

Description Similar to ABC1K8: Protein ACTIVITY OF BC1 COMPLEX KINASE 8, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g64940`	May participate in responses to oxidative stress, high light and heavy metals.	Loss of the Atypical Kinases ABC1K7 and ABC1K8 Changes the Lipid Composition of the Chloroplast Membrane.2015 · DOI: 10.1093/pcp/pcv046
`At4g08620`	May act as a high-affinity H⁺/sulfate symporter mediating root sulfate uptake under low-sulfur conditions.	The roles of three functional sulphate transporters involved in uptake and translocation of sulphate in Arabidopsis thaliana.2000 · DOI: 10.1046/j.1365-313x.2000.00768.x Two distinct high-affinity sulfate transporters with different inducibilities mediate uptake of sulfate in Arabidopsis roots.2002 · DOI: 10.1046/j.0960-7412.2001.01231.x
`At1g22150`	May act as a high-affinity H⁺/sulfate symporter mediating sulfate loading into sieve tubes.	Phloem-localizing sulfate transporter, Sultr1;3, mediates re-distribution of sulfur from source to sink organs in Arabidopsis.2003 · DOI: 10.1104/pp.014712

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000655 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006979 response to oxidative stress Biological Process

GO:0007623 circadian rhythm Biological Process

GO:0009644 response to high light intensity Biological Process

GO:0010150 leaf senescence Biological Process

GO:0034599 cellular response to oxidative stress Biological Process

GO:0042542 response to hydrogen peroxide Biological Process

GO:0046467 membrane lipid biosynthetic process Biological Process

GO:0046686 response to cadmium ion Biological Process

GO:0055085 transmembrane transport Biological Process

GO:1901031 regulation of response to reactive oxygen species Biological Process

GO:1902358 sulfate transmembrane transport Biological Process

GO:1990641 response to iron ion starvation Biological Process

KEGG gene cross-reference

ath:AT1G22150

ath:AT4G08620

ath:AT5G64940

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.285

Rank 1 · LXL04_000655 · OH-1004

Nucleus0.217

Rank 2 · LXL04_000655 · OH-1004

Cell membrane0.195

Rank 3 · LXL04_000655 · OH-1004

Cytoplasm0.193

Rank 4 · LXL04_000655 · OH-1004

Mitochondrion0.130

Rank 5 · LXL04_000655 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00916.27Sulfate_transp160-217 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_000655	`PF00916.27`	Sulfate_transp	160	217	5.9e-12	45.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q93Y08`	Arabidopsis thaliana	Protein ACTIVITY OF BC1 COMPLEX KINASE 8, chloroplastic	50.833%	Swiss-Prot	weak database homology
`Q9SAY1`	Arabidopsis thaliana	Sulfate transporter 1.1	73.214%	Swiss-Prot	weak database homology
`Q9FEP7`	Arabidopsis thaliana	Sulfate transporter 1.3	64.615%	Swiss-Prot	weak database homology

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