LXL04_000644 | RubberDandelionOmics

Gene overview

LXL04_000644

Reference: OH-1004 Chr: Chr01 Coordinates: 11750360-11754589 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2115 bp · LXL04_000644|LXL04_000644|OH1004|cDNA

ATGGGAACTGGTTCATCAATTAACCTTGATACCAGCGACGATCACGCCGGTGGTCAACTCTATGTGTCTCTCAAGCTGGAGAGTTACACTCCCAAAGGAGACCTTGTTCCTCACCTCTACGGTTCTGTCCCTCTCGTCGGCTCTTGGGACCCTTCCAAAGCTCTTCCGATGGAGCGAGAGTCATCTTCAACGTGGCAGTTAAGCTTTGTTTCATCTCCTAATCATGACACATTAGACTTCAAGTTCTTACTAAAGTCAAA...

CDS

Download CDS FASTA

2115 bp · LXL04_000644|LXL04_000644|OH1004|CDS

ATGGGAACTGGTTCATCAATTAACCTTGATACCAGCGACGATCACGCCGGTGGTCAACTCTATGTGTCTCTCAAGCTGGAGAGTTACACTCCCAAAGGAGACCTTGTTCCTCACCTCTACGGTTCTGTCCCTCTCGTCGGCTCTTGGGACCCTTCCAAAGCTCTTCCGATGGAGCGAGAGTCATCTTCAACGTGGCAGTTAAGCTTTGTTTCATCTCCTAATCATGACACATTAGACTTCAAGTTCTTACTAAAGTCAAA...

Protein

Download Protein FASTA

704 aa · LXL04_000644|LXL04_000644|OH1004|PROTEIN

MGTGSSINLDTSDDHAGGQLYVSLKLESYTPKGDLVPHLYGSVPLVGSWDPSKALPMERESSSTWQLSFVSSPNHDTLDFKFLLKSKDTNEQCIVEEGPTRQFTGGTLQGVTRLALFRLTTDEVLEYKVSIKADRVSPFDLAASWRAYQQNLEPSTVRGIPDVSINALPQDSENGMSSSLDLDLEQYVVPTPSTPVVYAANLTENPRSLNNIYNHPPPTIKEKEIGSKVYGMVESKSVGTFSPIEKEGGFVDRGVGSSRL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_000644`
TK1151 ID	TkA01G597950
OH-1004 ID	LXL04_000644
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.900
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_000644

Location Chr01:11750360-11754589 (+)

Description Similar to FKFBP: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g07110`	Synthesis and degradation of fructose 2,6-bisphosphate.	Structure and heterologous expression of a gene encoding fructose-6-phosphate,2-kinase/fructose-2,6-bisphosphatase from Arabidopsis thaliana.2000 · DOI: 10.1016/s0167-4781(00)00134-2 Phosphorylation and 14-3-3 binding of Arabidopsis 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase.2004 · DOI: 10.1111/j.1365-313x.2003.01992.x

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000644 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006000 fructose metabolic process Biological Process

GO:0006002 fructose 6-phosphate metabolic process Biological Process

GO:0006003 fructose 2,6-bisphosphate metabolic process Biological Process

GO:0006007 glucose catabolic process Biological Process

GO:0006094 gluconeogenesis Biological Process

GO:0006096 glycolytic process Biological Process

GO:0009749 response to glucose Biological Process

GO:0019249 lactate biosynthetic process Biological Process

GO:0032868 response to insulin Biological Process

GO:0033762 response to glucagon Biological Process

GO:0042594 response to starvation Biological Process

GO:0042866 pyruvate biosynthetic process Biological Process

KEGG gene cross-reference

ath:AT1G07110

hsa:5207

mmu:18639

rno:24638

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.363

Rank 1 · LXL04_000644 · OH-1004

Nucleus0.295

Rank 2 · LXL04_000644 · OH-1004

Cell membrane0.212

Rank 3 · LXL04_000644 · OH-1004

Plastid0.125

Rank 4 · LXL04_000644 · OH-1004

Golgi apparatus0.098

Rank 5 · LXL04_000644 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00686.26CBM_2024-105 aa

PF01591.256PF2K294-510 aa

PF13671.13AAA_33305-436 aa

PF00300.28His_Phos_1513-695 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_000644	`PF00686.26`	CBM_20	24	105	4e-07	30.4
LXL04_000644	`PF01591.25`	6PF2K	294	510	6.9e-82	274.8
LXL04_000644	`PF13671.13`	AAA_33	305	436	2e-06	28.9
LXL04_000644	`PF00300.28`	His_Phos_1	513	695	7.3e-38	130.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9MB58`	Arabidopsis thaliana	6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase	72.752%	Swiss-Prot	strong database homology

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