LXL04_000612 | RubberDandelionOmics

Gene overview

LXL04_000612

Reference: OH-1004 Chr: Chr01 Coordinates: 11127539-11133354 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

486 bp · LXL04_000612|LXL04_000612|OH1004|cDNA

ATGAAAGACTCCCCAAAAACCTGGAAACCCTACTGTTGTACAGCTGAAAACAAGCCGTTGCCGACCTTCCAAATCGGAATTCTCCAAAAATGTAGCACCGTACCGTCGTTCCGACGCATGTCTTTCTCGGACCTTAGTCGGTCGTCTTCTATGCGTCTTAATCAAGACATTCAGAGCTTCGGGCCTGATTTGTTTGATTTTATATTGAGCGAGCTCCGAGCTGTAACTCAGAATTTCTCGAGTAATTTCTTGCTGGGTGA...

CDS

Download CDS FASTA

486 bp · LXL04_000612|LXL04_000612|OH1004|CDS

ATGAAAGACTCCCCAAAAACCTGGAAACCCTACTGTTGTACAGCTGAAAACAAGCCGTTGCCGACCTTCCAAATCGGAATTCTCCAAAAATGTAGCACCGTACCGTCGTTCCGACGCATGTCTTTCTCGGACCTTAGTCGGTCGTCTTCTATGCGTCTTAATCAAGACATTCAGAGCTTCGGGCCTGATTTGTTTGATTTTATATTGAGCGAGCTCCGAGCTGTAACTCAGAATTTCTCGAGTAATTTCTTGCTGGGTGA...

Protein

Download Protein FASTA

161 aa · LXL04_000612|LXL04_000612|OH1004|PROTEIN

MKDSPKTWKPYCCTAENKPLPTFQIGILQKCSTVPSFRRMSFSDLSRSSSMRLNQDIQSFGPDLFDFILSELRAVTQNFSSNFLLGEGGFGKVHKGYVDESMRAGLKAQPVAVKLLDIEGLQGHREWLITRSTEKLREVEGGSFSEGSADRRSSGDRNPAF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_000612`
TK1151 ID	TkA01G599520
OH-1004 ID	LXL04_000612
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	100.000
Protein coverage (%)	TK1151 99.180 / OH-1004 75.155 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_000612

Location Chr01:11127539-11133354 (-)

Description Similar to PBL15: Probable serine/threonine-protein kinase PBL15

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g61590`	May be involved in plant defense signaling.	No verified direct reference in this release
`At2g05940`	Serine/threonine-protein kinase involved in disease resistance.	xopAC-triggered immunity against Xanthomonas depends on Arabidopsis receptor-like cytoplasmic kinase genes PBL2 and RIPK.2013 · DOI: 10.1371/journal.pone.0073469 Pseudomonas syringae Effector AvrPphB Suppresses AvrB-Induced Activation of RPM1 but Not AvrRpm1-Induced Activation.2015 · DOI: 10.1094/mpmi-08-14-0248-r
`At5g35580`	Involved in defense responses.	PBL13 Is a Serine/Threonine Protein Kinase That Negatively Regulates Arabidopsis Immune Responses.2015 · DOI: 10.1104/pp.15.01391

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000612 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002238 response to molecule of fungal origin Biological Process

GO:0006468 protein phosphorylation Biological Process

GO:0006952 defense response Biological Process

GO:0012501 programmed cell death Biological Process

GO:0032491 detection of molecule of fungal origin Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0050777 negative regulation of immune response Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0062207 regulation of pattern recognition receptor signaling pathway Biological Process

GO:1901141 regulation of lignin biosynthetic process Biological Process

GO:1903428 positive regulation of reactive oxygen species biosynthetic process Biological Process

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT1G61590

ath:AT2G05940

ath:AT5G35580

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.406

Rank 1 · LXL04_000612 · OH-1004

Nucleus0.351

Rank 2 · LXL04_000612 · OH-1004

Cell membrane0.242

Rank 3 · LXL04_000612 · OH-1004

Mitochondrion0.089

Rank 4 · LXL04_000612 · OH-1004

Endoplasmic reticulum0.075

Rank 5 · LXL04_000612 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SY91`	Arabidopsis thaliana	Probable serine/threonine-protein kinase PBL15	56.204%	Swiss-Prot	strong database homology
`Q9ZUF4`	Arabidopsis thaliana	Serine/threonine-protein kinase RIPK	62.105%	Swiss-Prot	moderate database homology
`F4JZW1`	Arabidopsis thaliana	Serine/threonine-protein kinase PBL13	57.895%	Swiss-Prot	moderate database homology

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