Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1656 bp · LXL04_000606|LXL04_000606|OH1004|cDNA
ATGCCGGATCCCAAAATTCGTACCGCTACCAGAAACCGTACTCGTTCTCGGCGTCTCTCCGCCTGTCACCGGCATCCTAGTGAAACCGTGACAGGGTTCTGTGCATTGTGCTTACGAGACCGTCTTGCCGGTTTAGATTCTtctactgctgaagctgaaGTTGAGAAGCTTGGTGTTTATAGCCGCCGTACCAGAGGCCACGCGGTTGCTTCTTCGTCCACTGCTGCTCCGGTGCTGCGACGGAGCAAGTCTGTTGCTGC...
1656 bp · LXL04_000606|LXL04_000606|OH1004|CDS
ATGCCGGATCCCAAAATTCGTACCGCTACCAGAAACCGTACTCGTTCTCGGCGTCTCTCCGCCTGTCACCGGCATCCTAGTGAAACCGTGACAGGGTTCTGTGCATTGTGCTTACGAGACCGTCTTGCCGGTTTAGATTCTTCTACTGCTGAAGCTGAAGTTGAGAAGCTTGGTGTTTATAGCCGCCGTACCAGAGGCCACGCGGTTGCTTCTTCGTCCACTGCTGCTCCGGTGCTGCGACGGAGCAAGTCTGTTGCTGC...
Protein
Download Protein FASTA551 aa · LXL04_000606|LXL04_000606|OH1004|PROTEIN
MPDPKIRTATRNRTRSRRLSACHRHPSETVTGFCALCLRDRLAGLDSSTAEAEVEKLGVYSRRTRGHAVASSSTAAPVLRRSKSVAAERCESLNGLATDPRRKSCDVRGRSTLSDLFVVDDTNRGGNGVARAESRNLGFSSITEPVLESKEDEDEVDDDEEEEYGDDGDEIRVSDDVFVRDEVDDVDIEEEGDLKTMKEFIDIELQTKRRNFWEAASVFSQKLRKWRQKQKQKKQNRGYNGGTDIDRSKLGRFRDTQSEV...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_000606 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_000606 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:11003644-11005299 (+) | |||||||||
| Description | Similar to OPS: Protein OCTOPUS | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0009742 brassinosteroid mediated signaling pathway Biological Process GO:0010088 phloem development Biological Process GO:0010233 phloem transport Biological Process GO:0010588 cotyledon vascular tissue pattern formation Biological Process GO:0022622 root system development Biological Process GO:0030154 cell differentiation Biological Process GO:0042659 regulation of cell fate specification Biological Process GO:2000037 regulation of stomatal complex patterning Biological Process GO:2000280 regulation of root development Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005886 plasma membrane Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT3G09070 ath:AT5G01170 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF05340.18DUF74012-470 aaPF05340.18DUF740485-528 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_000606 | PF05340.18 | DUF740 | 12 | 470 | 7e-119 | 399.0 |
| LXL04_000606 | PF05340.18 | DUF740 | 485 | 528 | 7e-119 | 399.0 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.