LXL04_000492 | RubberDandelionOmics

Gene overview

LXL04_000492

Reference: OH-1004 Chr: Chr01 Coordinates: 8987310-8992036 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3141 bp · LXL04_000492|LXL04_000492|OH1004|cDNA

ATGGAGAGGAAGGGAGGAAACACGGTTCCGAGTTCACCATCGCACACCCCAAGGTCCACTGACAAATCAGTAAGAGATCTCCGACATGTAGAAGGAAATATGAGTGGTAAACACGATAAAGAAAAAGGCGTGAATGTTCAGGTTGTTGTGCGATGCAGACCAATGAACGCCGAAGAGGAGAAATTACACACACCGATGGTTATTACATGCTCAGAAAACAAGAGGGAAATATGCGCAATTCAGACTATAGCCAACAAGCA...

CDS

Download CDS FASTA

3141 bp · LXL04_000492|LXL04_000492|OH1004|CDS

ATGGAGAGGAAGGGAGGAAACACGGTTCCGAGTTCACCATCGCACACCCCAAGGTCCACTGACAAATCAGTAAGAGATCTCCGACATGTAGAAGGAAATATGAGTGGTAAACACGATAAAGAAAAAGGCGTGAATGTTCAGGTTGTTGTGCGATGCAGACCAATGAACGCCGAAGAGGAGAAATTACACACACCGATGGTTATTACATGCTCAGAAAACAAGAGGGAAATATGCGCAATTCAGACTATAGCCAACAAGCA...

Protein

Download Protein FASTA

1046 aa · LXL04_000492|LXL04_000492|OH1004|PROTEIN

MERKGGNTVPSSPSHTPRSTDKSVRDLRHVEGNMSGKHDKEKGVNVQVVVRCRPMNAEEEKLHTPMVITCSENKREICAIQTIANKQIDRSFVFDKVFGPKSQQRDLYHSAVSPIVFEVLEGYNCTIFAYGQTGTGKTYTMEGGGRKKNGEFPSDAGVIPRAVKQIFDILEAQNAEYSMKVTFLELYNEEITDLLALEEASKYPEDKSKKPIALMEDGKGGVLVRGLEEEIVSTADEIYRILEKGSAKRRTAETLMNKQS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_000492`
TK1151 ID	TkA01G608630
OH-1004 ID	LXL04_000492
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	98.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_000492

Location Chr01:8987310-8992036 (-)

Description Similar to KIN5D: Kinesin-like protein KIN-5D

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g45850`	Responsible for microtubule translocation.	No verified direct reference in this release
`At2g28620`	Responsible for microtubule translocation.	No verified direct reference in this release
`At2g37420`	Responsible for microtubule translocation.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0117798`	Responsible for microtubule translocation.	No verified direct reference in this release
`Os08g0558400`	Responsible for microtubule translocation.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000492 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000281 mitotic cytokinesis Biological Process

GO:0000911 cytokinesis by cell plate formation Biological Process

GO:0007018 microtubule-based movement Biological Process

GO:0007052 mitotic spindle organization Biological Process

GO:0009826 unidimensional cell growth Biological Process

GO:0043622 cortical microtubule organization Biological Process

GO:0051231 spindle elongation Biological Process

GO:0090307 mitotic spindle assembly Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005819 spindle Cellular Component

GO:0005874 microtubule Cellular Component

GO:0005876 spindle microtubule Cellular Component

KEGG gene cross-reference

ath:AT2G28620

ath:AT2G37420

dosa:Os05g0117798

osa:9268593

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.739

Rank 1 · LXL04_000492 · OH-1004

Nucleus0.223

Rank 2 · LXL04_000492 · OH-1004

Cell membrane0.079

Rank 3 · LXL04_000492 · OH-1004

Golgi apparatus0.069

Rank 4 · LXL04_000492 · OH-1004

Mitochondrion0.058

Rank 5 · LXL04_000492 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16796.12Microtub_bd45-195 aa

PF00225.30Kinesin51-399 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_000492	`PF16796.12`	Microtub_bd	45	195	1.2e-27	97.4
LXL04_000492	`PF00225.30`	Kinesin	51	399	5.7e-111	371.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LZU5`	Arabidopsis thaliana	Kinesin-like protein KIN-5D	71.978%	Swiss-Prot	strong database homology
`F4IIS5`	Arabidopsis thaliana	Kinesin-like protein KIN-5A	65.048%	Swiss-Prot	strong database homology
`Q0WQJ7`	Arabidopsis thaliana	Kinesin-like protein KIN-5B	45.472%	Swiss-Prot	moderate database homology
`Q5W7C6`	Oryza sativa subsp. japonica	Kinesin-like protein KIN-5A	65.270%	Swiss-Prot	strong database homology
`B7EJ91`	Oryza sativa subsp. japonica	Kinesin-like protein KIN-5C	46.425%	Swiss-Prot	moderate database homology

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