LXL04_000323 | RubberDandelionOmics

Gene overview

LXL04_000323

Reference: OH-1004 Chr: Chr01 Coordinates: 6038493-6040819 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1785 bp · LXL04_000323|LXL04_000323|OH1004|cDNA

ATGGGCGGATTCCCTTTCGATTCAAAATCAGGGCAGGCCATACTCTTGGTTCTTCTAGTAATGACTGCCTCTTTCTATACCGGAACCTTTTTCGGTCGCAATTCTTCCAATTCTTCCTCAATACCACCACCATCATCGACAGAATCAACAGGTGCTCTTACGTTTACTAACAAAATCGCTCTTACTCATCGTAACTCACCACTTATAATCCCAGAATCCGGAATGAACATATGCCCAATTGAATTAAACGAGCACATTCC...

CDS

Download CDS FASTA

1785 bp · LXL04_000323|LXL04_000323|OH1004|CDS

ATGGGCGGATTCCCTTTCGATTCAAAATCAGGGCAGGCCATACTCTTGGTTCTTCTAGTAATGACTGCCTCTTTCTATACCGGAACCTTTTTCGGTCGCAATTCTTCCAATTCTTCCTCAATACCACCACCATCATCGACAGAATCAACAGGTGCTCTTACGTTTACTAACAAAATCGCTCTTACTCATCGTAACTCACCACTTATAATCCCAGAATCCGGAATGAACATATGCCCAATTGAATTAAACGAGCACATTCC...

Protein

Download Protein FASTA

594 aa · LXL04_000323|LXL04_000323|OH1004|PROTEIN

MGGFPFDSKSGQAILLVLLVMTASFYTGTFFGRNSSNSSSIPPPSSTESTGALTFTNKIALTHRNSPLIIPESGMNICPIELNEHIPCHDPSYIKELTPNLDTSKREDLERHCPPLERRLFCLIPPPKDYKIPIRWPTSRDYIWRTNVNHTRLAQVKGGQNWVHEKDQLWWFPGGGTHFKHGADEYIQRLGNMTTNNTGDLRASGVYQVLDVGCGVASFSAYLLPLNIKTMSFAPKDGHENQIQFALERGISAMISALAT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_000323`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_000323

Location Chr01:6038493-6040819 (-)

Description Similar to At3g10200: Probable methyltransferase PMT6

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g10200`	Probable methyltransferase PMT6.	No verified direct reference in this release
`At5g04060`	Probable methyltransferase PMT7.	No verified direct reference in this release
`At1g04430`	Probable methyltransferase PMT8.	No verified direct reference in this release
`At3g23300`	Probable methyltransferase PMT1.	No verified direct reference in this release
`At4g14360`	Probable methyltransferase PMT3.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000323 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0032259 methylation Biological Process

GO:0000138 Golgi trans cisterna Cellular Component

GO:0000139 Golgi membrane Cellular Component

GO:0000325 plant-type vacuole Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005768 endosome Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005797 Golgi medial cisterna Cellular Component

GO:0005802 trans-Golgi network Cellular Component

GO:0009506 plasmodesma Cellular Component

KEGG gene cross-reference

ath:AT1G04430

ath:AT3G10200

ath:AT3G23300

ath:AT4G14360

ath:AT5G04060

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.746

Rank 1 · LXL04_000323 · OH-1004

Endoplasmic reticulum0.077

Rank 2 · LXL04_000323 · OH-1004

Cell membrane0.067

Rank 3 · LXL04_000323 · OH-1004

Extracellular0.057

Rank 4 · LXL04_000323 · OH-1004

Cytoplasm0.044

Rank 5 · LXL04_000323 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03141.23Methyltransf_2984-588 aa

PF13847.13Methyltransf_31207-309 aa

PF13649.13Methyltransf_25209-301 aa

PF08241.19Methyltransf_11210-304 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_000323	`PF03141.23`	Methyltransf_29	84	588	7.7e-204	678.7
LXL04_000323	`PF13847.13`	Methyltransf_31	207	309	1.2e-06	29.0
LXL04_000323	`PF13649.13`	Methyltransf_25	209	301	2.5e-08	35.2
LXL04_000323	`PF08241.19`	Methyltransf_11	210	304	4.4e-11	44.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q84TJ0`	Arabidopsis thaliana	Probable methyltransferase PMT6	67.347%	Swiss-Prot	strong database homology
`Q9LZA4`	Arabidopsis thaliana	Probable methyltransferase PMT7	66.667%	Swiss-Prot	strong database homology
`Q940J9`	Arabidopsis thaliana	Probable methyltransferase PMT8	43.092%	Swiss-Prot	moderate database homology
`Q8H118`	Arabidopsis thaliana	Probable methyltransferase PMT1	47.070%	Swiss-Prot	moderate database homology
`Q93YV7`	Arabidopsis thaliana	Probable methyltransferase PMT3	46.314%	Swiss-Prot	moderate database homology

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