LXL04_000256 | RubberDandelionOmics

Gene overview

LXL04_000256

Reference: OH-1004 Chr: Chr01 Coordinates: 4795695-4798216 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

912 bp · LXL04_000256|LXL04_000256|OH1004|cDNA

ATGGGGGGTTTTACTCAACAGGCAGCAAACTGTGAGCTGGAACCATGGCGAGACCTCAGAGGCACGATCGTTATGGTCACCGGCGCGTCATCCGGCATAGGATGGGAATTCTGCATCGACTTAGCCAAAGCTGGTTGCAGGATTATTGCCGCCGCCCGCCGAACCGACCGGCTCAAGGCTCTGTGCGACGCAATTAACAATTTGGATATTTCCGGTACTCATCGGAGTCAAGCGAGGGACAAGGACGTCCTAGCGGTGGC...

CDS

Download CDS FASTA

912 bp · LXL04_000256|LXL04_000256|OH1004|CDS

ATGGGGGGTTTTACTCAACAGGCAGCAAACTGTGAGCTGGAACCATGGCGAGACCTCAGAGGCACGATCGTTATGGTCACCGGCGCGTCATCCGGCATAGGATGGGAATTCTGCATCGACTTAGCCAAAGCTGGTTGCAGGATTATTGCCGCCGCCCGCCGAACCGACCGGCTCAAGGCTCTGTGCGACGCAATTAACAATTTGGATATTTCCGGTACTCATCGGAGTCAAGCGAGGGACAAGGACGTCCTAGCGGTGGC...

Protein

Download Protein FASTA

303 aa · LXL04_000256|LXL04_000256|OH1004|PROTEIN

MGGFTQQAANCELEPWRDLRGTIVMVTGASSGIGWEFCIDLAKAGCRIIAAARRTDRLKALCDAINNLDISGTHRSQARDKDVLAVAVELDVSADGPTIKASVLKAWDAFGRIDALINNAGIRGPVKNPLNLSEEDWDKTFTTNVKGSWMVSKYVALQMIASNQGGSIVNISSTAGLNRGHLPGALAYASSKSSLNTITKVMAMELGGYKIRVNSISPGIFKSEITEELLQKKWLKNVVLKTVPLRELGVTDPGLTSLVK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_000256`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_000256`
Location	Chr01:4795695-4798216 (+)
Description	Similar to fabG: 3-oxoacyl-[acyl-carrier-protein] reductase FabG (Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_000256` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0030497 fatty acid elongation Biological Process GO:0005886 plasma membrane Cellular Component GO:0004316 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity Molecular Function GO:0016491 oxidoreductase activity Molecular Function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Molecular Function GO:0050661 NADP binding Molecular Function GO:0051287 NAD binding Molecular Function
KEGG gene cross-reference	mtc:MT0793 mtu:Rv0769 mtv:RVBD_0769 stm:STM2445 tma:TM0325 tma:TM1724 tmi:THEMA_03100 tmi:THEMA_05620 tmm:Tmari_0323 tmm:Tmari_1732 tmw:THMA_0332 tmw:THMA_1766 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.574

Rank 1 · LXL04_000256 · OH-1004

Peroxisome0.232

Rank 2 · LXL04_000256 · OH-1004

Nucleus0.199

Rank 3 · LXL04_000256 · OH-1004

Mitochondrion0.107

Rank 4 · LXL04_000256 · OH-1004

Plastid0.044

Rank 5 · LXL04_000256 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23441.1SDR20-233 aa

PF00106.32adh_short23-232 aa

PF08659.17KR24-198 aa

PF13561.13adh_short_C228-272 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_000256	`PF23441.1`	SDR	20	233	9.4e-06	25.9
LXL04_000256	`PF00106.32`	adh_short	23	232	1.2e-47	162.7
LXL04_000256	`PF08659.17`	KR	24	198	1e-06	29.5
LXL04_000256	`PF13561.13`	adh_short_C2	28	272	7.8e-39	134.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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