LXL04_000254 | RubberDandelionOmics

Gene overview

LXL04_000254

Reference: OH-1004 Chr: Chr01 Coordinates: 4787623-4789215 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1593 bp · LXL04_000254|LXL04_000254|OH1004|cDNA

ATGGCAGTTCAAGCACCACGTGCATCTAAGACAGAGAGCTATGTCGACAACAAACGGAAGGACGACATCCGTATGGCCAACATCAAATCGGCACGCTCCGTCGCAGACGCCGTCCGTACCAGTCTCGGTCCGAAGGGAATGGACAAGATGATTTCTACAGCCTCCGGAGAAGTCATCATCACTAACGATGGCGCCACCatcctcaacaaaatggaagTCCTTCAGCCCGCCGCCAAGATGCTCGTTGAACTCTCCAAGTC...

CDS

Download CDS FASTA

1593 bp · LXL04_000254|LXL04_000254|OH1004|CDS

ATGGCAGTTCAAGCACCACGTGCATCTAAGACAGAGAGCTATGTCGACAACAAACGGAAGGACGACATCCGTATGGCCAACATCAAATCGGCACGCTCCGTCGCAGACGCCGTCCGTACCAGTCTCGGTCCGAAGGGAATGGACAAGATGATTTCTACAGCCTCCGGAGAAGTCATCATCACTAACGATGGCGCCACCATCCTCAACAAAATGGAAGTCCTTCAGCCCGCCGCCAAGATGCTCGTTGAACTCTCCAAGTC...

Protein

Download Protein FASTA

530 aa · LXL04_000254|LXL04_000254|OH1004|PROTEIN

MAVQAPRASKTESYVDNKRKDDIRMANIKSARSVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDVVAGDGTTTVVVIAGALLKQCQTLLHSGIHPTVISDSLHKASMKAVDVLTAMAVPVELSDRESLVKSASTSLNSKVVSQYSSLLAPLAVDSVLSVVDPAKPDLVDLRDVKIVKKLGGTVDDTELVKGLVFDKKVSHAAGGPTRVENAKIAVIQFQISPPKTDIEQSIVVSD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_000254`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_000254

Location Chr01:4787623-4789215 (-)

Description Similar to CCT4: T-complex protein 1 subunit delta

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g18190`	Molecular chaperone; assists the folding of proteins upon ATP hydrolysis.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_000254 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006457 protein folding Biological Process

GO:0007339 binding of sperm to zona pellucida Biological Process

GO:0032212 positive regulation of telomere maintenance via telomerase Biological Process

GO:0050821 protein stabilization Biological Process

GO:0090666 scaRNA localization to Cajal body Biological Process

GO:1904871 positive regulation of protein localization to Cajal body Biological Process

GO:1904874 positive regulation of telomerase RNA localization to Cajal body Biological Process

GO:0002199 zona pellucida receptor complex Cellular Component

GO:0005654 nucleoplasm Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005813 centrosome Cellular Component

GO:0005829 cytosol Cellular Component

KEGG gene cross-reference

ath:AT3G18190

ddi:DDB_G0292872

hsa:10575

mmu:12464

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.801

Rank 1 · LXL04_000254 · OH-1004

Nucleus0.234

Rank 2 · LXL04_000254 · OH-1004

Mitochondrion0.071

Rank 3 · LXL04_000254 · OH-1004

Cell membrane0.039

Rank 4 · LXL04_000254 · OH-1004

Peroxisome0.039

Rank 5 · LXL04_000254 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00118.30Cpn60_TCP134-528 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_000254	`PF00118.30`	Cpn60_TCP1	34	528	5e-163	544.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LV21`	Arabidopsis thaliana	T-complex protein 1 subunit delta	90.095%	Swiss-Prot	strong database homology

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