LXL04_000130 | RubberDandelionOmics

Gene overview

LXL04_000130

Reference: OH-1004 Chr: Chr01 Coordinates: 2879194-2881953 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1380 bp · LXL04_000130|LXL04_000130|OH1004|cDNA

ATGTGTATAACTTCACCATTACCGGTCAACGAGGAACTCTATGGTGAGTGGTGGAAATCGGATACCGAAGCAGTGATTAACCAGGCGTTGAAATCTGGCTTGGCTCCAAATATCTTAGACGCCCATACCATCAACGGTCATCCGGGAAGAATCCATGGTTGTCAGACACAAGGAGGGTTTCATTTTAGTGTTGAAAAAGGAAAATCGTACATGCTACGAATAATCAACGCTGCACTCAACGAAGAACTGTTCTTCAAGAT...

CDS

Download CDS FASTA

1380 bp · LXL04_000130|LXL04_000130|OH1004|CDS

ATGTGTATAACTTCACCATTACCGGTCAACGAGGAACTCTATGGTGAGTGGTGGAAATCGGATACCGAAGCAGTGATTAACCAGGCGTTGAAATCTGGCTTGGCTCCAAATATCTTAGACGCCCATACCATCAACGGTCATCCGGGAAGAATCCATGGTTGTCAGACACAAGGAGGGTTTCATTTTAGTGTTGAAAAAGGAAAATCGTACATGCTACGAATAATCAACGCTGCACTCAACGAAGAACTGTTCTTCAAGAT...

Protein

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459 aa · LXL04_000130|LXL04_000130|OH1004|PROTEIN

MCITSPLPVNEELYGEWWKSDTEAVINQALKSGLAPNILDAHTINGHPGRIHGCQTQGGFHFSVEKGKSYMLRIINAALNEELFFKIAGHKMTVVEVDAVYVKPFKTDTIVIAPGQTTNAIITANKKSGKYMMIASPFMDSPIAVDNKTATATIHYTQRRSHKMENYYNRITSSKRKAHCPSSSPSTTNVLLLSFMINARSAYDYTGTLASSPTTLTTPPPQNASAVANSFIDSLRSLNSKKYPAKVPLQIDHSLYFTVG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_000130`
TK1151 ID	TkA01G632230
OH-1004 ID	LXL04_000130
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	87.300
Protein coverage (%)	TK1151 92.889 / OH-1004 98.911 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_000130

Location Chr01:2879194-2881953 (+)

Description Similar to IRX12: Laccase-4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g38080`	Lignin degradation and detoxification of lignin-derived products (By similarity).	No verified direct reference in this release
`At5g01190`	Lignin degradation and detoxification of lignin-derived products.	No verified direct reference in this release
`At5g58910`	Lignin degradation and detoxification of lignin-derived products.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os11g0708100`	Lignin degradation and detoxification of lignin-derived products.	No verified direct reference in this release
`Os01g0634500`	Lignin degradation and detoxification of lignin-derived products.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000130 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009809 lignin biosynthetic process Biological Process

GO:0009834 plant-type secondary cell wall biogenesis Biological Process

GO:0046274 lignin catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0048046 apoplast Cellular Component

GO:0005507 copper ion binding Molecular Function

GO:0016491 oxidoreductase activity Molecular Function

GO:0052716 hydroquinone:oxygen oxidoreductase activity Molecular Function

KEGG gene cross-reference

ath:AT2G38080

ath:AT5G01190

ath:AT5G58910

osa:107276614

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.843

Rank 1 · LXL04_000130 · OH-1004

Cytoplasm0.063

Rank 2 · LXL04_000130 · OH-1004

Cell membrane0.045

Rank 3 · LXL04_000130 · OH-1004

Endoplasmic reticulum0.039

Rank 4 · LXL04_000130 · OH-1004

Lysosome / Vacuole0.026

Rank 5 · LXL04_000130 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00394.29Cu-oxidase15-158 aa

PF07731.21Cu-oxidase_2308-442 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_000130	`PF00394.29`	Cu-oxidase	15	158	1.9e-45	155.5
LXL04_000130	`PF07731.21`	Cu-oxidase_2	308	442	2.2e-46	157.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O80434`	Arabidopsis thaliana	Laccase-4	67.105%	Swiss-Prot	strong database homology
`Q6ID18`	Arabidopsis thaliana	Laccase-10	63.676%	Swiss-Prot	strong database homology
`Q1PDH6`	Arabidopsis thaliana	Laccase-16	56.769%	Swiss-Prot	strong database homology
`Q0IQU1`	Oryza sativa subsp. japonica	Laccase-22	57.366%	Swiss-Prot	strong database homology
`Q8RYM9`	Oryza sativa subsp. japonica	Laccase-2	51.778%	Swiss-Prot	strong database homology

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