LXL04_000101 | RubberDandelionOmics

Gene overview

LXL04_000101

Reference: OH-1004 Chr: Chr01 Coordinates: 2349312-2350943 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

738 bp · LXL04_000101|LXL04_000101|OH1004|cDNA

ATGCAGACTTCCTCATCTTCTTCCCTATGTGCTATCGTTCCTGTAGATTGCATTCGGAACTGTTCAAATCAGCTAGCATATCCTTGCAGTCTCAGTTTGGGGTTATCAAGAGGGAGCAGAGAGCTCAAGGTTTCTCGATTGAAGGCTGGCTTCTGGGAATCCATTAGATCTGGGTTGACAAAGAACAACTCAACACAGGTTATAGAACCACCTTCTTCTACTTctaaagaagatgaagaagaaccTCTACCAGAAGAATT...

CDS

Download CDS FASTA

738 bp · LXL04_000101|LXL04_000101|OH1004|CDS

ATGCAGACTTCCTCATCTTCTTCCCTATGTGCTATCGTTCCTGTAGATTGCATTCGGAACTGTTCAAATCAGCTAGCATATCCTTGCAGTCTCAGTTTGGGGTTATCAAGAGGGAGCAGAGAGCTCAAGGTTTCTCGATTGAAGGCTGGCTTCTGGGAATCCATTAGATCTGGGTTGACAAAGAACAACTCAACACAGGTTATAGAACCACCTTCTTCTACTTCTAAAGAAGATGAAGAAGAACCTCTACCAGAAGAATT...

Protein

Download Protein FASTA

245 aa · LXL04_000101|LXL04_000101|OH1004|PROTEIN

MQTSSSSSLCAIVPVDCIRNCSNQLAYPCSLSLGLSRGSRELKVSRLKAGFWESIRSGLTKNNSTQVIEPPSSTSKEDEEEPLPEEFVLIEKTLPDGTIEQIIFSSGGDVDIYDLQALCDKVGWPRRPLSKLAAALRNSYMVATLHSIKKSSTGEELNEKKLIGMARATSDHAFNATIWDVLVDPTYQGQGLGKALIEKIIRALLQRDIGNITLFADSKVVDFYRNLGFEADPEGIKGMFWYPRF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_000101`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_000101

Location Chr01:2349312-2350943 (+)

Description Similar to TAP2: Probable acetyltransferase TAP2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g32070`	Protein acetyltransferase with dual specificity triggering both N-alpha-acetylation (NTA), with a preference for alanine, serine, threonine, methionine and to a lower extent valine as substrates (can also use glycine and leucine), and epsilon-lysine acetylation (KA) of several plastid proteins.	Cloning of Arabidopsis serotonin N-acetyltransferase and its role with caffeic acid O-methyltransferase in the biosynthesis of melatonin in vitro despite their different subcellular localizations.2014 · DOI: 10.1111/jpi.12181 Melatonin Improved Anthocyanin Accumulation by Regulating Gene Expressions and Resulted in High Reactive Oxygen Species Scavenging Capacity in Cabbage.2016 · DOI: 10.3389/fpls.2016.00197 Melatonin induction and its role in high light stress tolerance in Arabidopsis thaliana.2018 · DOI: 10.1111/jpi.12504 Chloroplast Acetyltransferase NSI Is Required for State Transitions in Arabidopsis thaliana.2018 · DOI: 10.1105/tpc.18.00155 Daily rhythms of phytomelatonin signaling modulate diurnal stomatal closure via regulating reactive oxygen species dynamics in Arabidopsis.2020 · DOI: 10.1111/jpi.12640 Melatonin Represses Oil and Anthocyanin Accumulation in Seeds.2020 · DOI: 10.1104/pp.20.00117 Melatonin Regulates Chloroplast Protein Quality Control via a Mitogen-Activated Protein Kinase Signaling Pathway.2021 · DOI: 10.3390/antiox10040511 Melatonin inhibits seed germination by crosstalk with abscisic acid, gibberellin, and auxin in Arabidopsis.2021 · DOI: 10.1111/jpi.12736 CAND2/PMTR1 Is Required for Melatonin-Conferred Osmotic Stress Tolerance in Arabidopsis.2021 · DOI: 10.3390/ijms22084014 Roles of Endogenous Melatonin in Resistance to Botrytis cinerea Infection in an Arabidopsis Model.2021 · DOI: 10.3389/fpls.2021.683228 H2S aids osmotic stress resistance by S-sulfhydration of melatonin production-related enzymes in Arabidopsis thaliana.2022 · DOI: 10.1007/s00299-021-02813-2

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2Y5T7`	Catalyzes the N-acetylation of serotonin into N-acetylserotonin, the penultimate step in the synthesis of melatonin.	No verified direct reference in this release
`Os05g0481000`	Catalyzes the N-acetylation of serotonin into N- acetylserotonin, the penultimate step in the synthesis of melatonin.	Molecular cloning of rice serotonin N-acetyltransferase, the penultimate gene in plant melatonin biosynthesis.2013 · DOI: 10.1111/jpi.12011 Cellular localization and kinetics of the rice melatonin biosynthetic enzymes SNAT and ASMT.2014 · DOI: 10.1111/jpi.12103 Cloning and characterization of the serotonin N-acetyltransferase-2 gene (SNAT2) in rice (Oryza sativa).2016 · DOI: 10.1111/jpi.12339 Overexpression of rice serotonin N-acetyltransferase 1 in transgenic rice plants confers resistance to cadmium and senescence and increases grain yield.2017 · DOI: 10.1111/jpi.12392

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000101 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006474 N-terminal protein amino acid acetylation Biological Process

GO:0006515 protein quality control for misfolded or incompletely synthesized proteins Biological Process

GO:0006952 defense response Biological Process

GO:0006970 response to osmotic stress Biological Process

GO:0007623 circadian rhythm Biological Process

GO:0009409 response to cold Biological Process

GO:0009644 response to high light intensity Biological Process

GO:0010027 thylakoid membrane organization Biological Process

GO:0010187 negative regulation of seed germination Biological Process

GO:0010344 seed oilbody biogenesis Biological Process

GO:0010555 response to mannitol Biological Process

GO:0018394 peptidyl-lysine acetylation Biological Process

KEGG gene cross-reference

ath:AT1G32070

dosa:Os05g0481000

osa:4339123

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.984

Rank 1 · LXL04_000101 · OH-1004

Mitochondrion0.024

Rank 2 · LXL04_000101 · OH-1004

Cytoplasm0.023

Rank 3 · LXL04_000101 · OH-1004

Nucleus0.023

Rank 4 · LXL04_000101 · OH-1004

Peroxisome0.015

Rank 5 · LXL04_000101 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00583.32Acetyltransf_1157-229 aa

PF13508.14Acetyltransf_7159-230 aa

PF13673.14Acetyltransf_10159-232 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_000101	`PF00583.32`	Acetyltransf_1	157	229	5.6e-14	53.1
LXL04_000101	`PF13508.14`	Acetyltransf_7	159	230	3.3e-12	47.3
LXL04_000101	`PF13673.14`	Acetyltransf_10	159	232	1.5e-11	45.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q7X9V3`	Arabidopsis thaliana	GCN5-related N-acetyltransferase 2, chloroplastic	70.000%	Swiss-Prot	strong database homology
`A2Y5T7`	Oryza sativa subsp. indica	Serotonin N-acetyltransferase 1, chloroplastic	75.000%	Swiss-Prot	strong database homology
`Q5KQI6`	Oryza sativa subsp. japonica	Serotonin N-acetyltransferase 1, chloroplastic	75.000%	Swiss-Prot	strong database homology

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