Sequence BLAST

Choose either the OH-1004 or TK1151 reference version, then run gDNA, CDS, or protein BLAST. 15 bp primer-level nucleotide queries automatically use blastn-short settings. Official TK1151 IDs, TK1151 IDs and OH-1004 IDs are resolved to the selected reference version.

Reference version Sequence database Mode E-value Max hits Min identity % Min coverage %

Paste FASTA, raw sequence, or a TK1151 / TK1151 / OH-1004 gene ID for CDS/protein databases

Primer mode is for 15-30 bp nucleotide queries and uses blastn-short, word size 7, with dust/soft masking disabled. gDNA is for genomic placement, CDS for coding sequences, and protein for amino-acid queries. Each run accepts up to 20 queries and returns up to 100 hits.

Database Status

Database	Program	Use	Index
OH-1004 whole genome	blastn	For primers, promoters and genomic fragments; hits link to OH-1004 genes or JBrowse intervals.	Ready
OH-1004 CDS	blastn	For nucleotide sequences or gene IDs resolved to OH-1004 representative CDS sequences.	Ready
OH-1004 protein	blastp	For amino-acid sequences or gene IDs resolved to OH-1004 representative proteins.	Ready
TK1151 whole genome	blastn	For primers, promoters and genomic fragments against the TK1151 reference genome.	Ready
TK1151 CDS	blastn	For nucleotide sequences or gene IDs resolved to TK1151 representative CDS sequences.	Ready
TK1151 protein	blastp	For amino-acid sequences or gene IDs resolved to TK1151 representative proteins.	Ready