API Docs
Current public interfaces are page queries and TSV downloads. Downloads are scoped to the current gene, interval, gene set, or data-layer summary.
Query And Download Endpoints
| Use | URL | Export Scope |
|---|---|---|
| Gene annotation TSV | /rubber/annotation.tsv?q=LXL04_000258 | Current gene |
| Gene-set annotation TSV | /rubber/enrichment.tsv?genes=LXL04_000258%0ATkA01G000070 | Annotations for the current gene set; no statistical enrichment p/q |
| Expression atlas TSV | /rubber/expression.tsv?q=LXL04_000258&dataset=PRJNA745038_MeJA_laticifer_RNAseq | Current gene and dataset |
| Homology TSV | /rubber/homology.tsv?q=LXL04_000258 | Current query |
| Domain TSV | /rubber/domains.tsv?q=LXL04_000258 | Current query |
| Protein association TSV | /rubber/ppi.tsv?q=TkA05G095790 | Current query |
| Coexpression TSV | /rubber/coexpression.tsv?q=LXL04_000258 | Current query |
| ID converter TSV | /rubber/id-converter.tsv?q=TkA01G000650 | Current ID |
| Synteny TSV | /rubber/synteny.tsv?q=TkA01G000650 | Current ID or block |
| Interval TSV | /rubber/interval.tsv?region=CM104799.1:59000-62000 | Current interval |
| Frozen network source manifest | /rubber/network/source-manifest.tsv | Frozen versions, hashes, and source boundaries |
| Dataset summary TSV | /rubber/dataset-summary.tsv | Current public data layers |
Boundary Notes
Page download buttons do not export whole databases; FASTA/GFF files on the sequence download page are explicitly labeled data packages.
The gene-set annotation endpoint retains the legacy /enrichment.tsv URL. It returns GO annotations and KEGG gene cross-references, without a background-based statistical enrichment test.