Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | TkA08G406180 |
|---|---|
| Query reference | TK1151 |
| Location | Chr08:103354836-103359354 (+) |
| Description | Similar to RING1A: Putative E3 ubiquitin-protein ligase RING1a (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_034514 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
This query returns 37 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At5g44280 |
Putative E3 ubiquitin-protein ligase that mediates monoubiquitination of 'Lys-119' of histone H2A (H2AK119ub), thereby playing a central role in histone code and gene regulation. | |
At1g03770 |
Putative E3 ubiquitin-protein ligase that mediates monoubiquitination of 'Lys-119' of histone H2A (H2AK119ub), thereby playing a central role in histone code and gene regulation. |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000122 | negative regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.182; coverage=52.133; evalue=3.06e-27; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000278 | mitotic cell cycle | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.182; coverage=52.133; evalue=3.06e-27; UniProt GO evidence=ISS:ZFIN | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0001709 | cell fate determination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.244; coverage=92.18; evalue=4.32e-83; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006325 | chromatin organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.505; coverage=23.934; evalue=6.36e-27; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006338 | chromatin remodeling | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.505; coverage=23.934; evalue=6.36e-27; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.244; coverage=92.18; evalue=4.32e-83; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007281 | germ cell development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.505; coverage=23.934; evalue=6.36e-27; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009845 | seed germination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.244; coverage=92.18; evalue=4.32e-83; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009948 | anterior/posterior axis specification | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.182; coverage=52.133; evalue=3.06e-27; UniProt GO evidence=ISS:ZFIN | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010076 | maintenance of floral meristem identity | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.244; coverage=92.18; evalue=4.32e-83; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010077 | maintenance of inflorescence meristem identity | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.244; coverage=92.18; evalue=4.32e-83; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010467 | gene expression | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.505; coverage=23.934; evalue=6.36e-27; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010492 | maintenance of shoot apical meristem identity | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.244; coverage=92.18; evalue=4.32e-83; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016567 | protein ubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.244; coverage=92.18; evalue=4.32e-83; UniProt GO evidence=IEA:UniProtKB-UniPathway | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032526 | response to retinoic acid | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.505; coverage=23.934; evalue=6.36e-27; UniProt GO evidence=IEP:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0040029 | epigenetic regulation of gene expression | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.182; coverage=52.133; evalue=3.06e-27; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045814 | negative regulation of gene expression, epigenetic | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.244; coverage=92.18; evalue=4.32e-83; UniProt GO evidence=IGI:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045892 | negative regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.244; coverage=92.18; evalue=4.32e-83; UniProt GO evidence=IGI:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048364 | root development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.244; coverage=92.18; evalue=4.32e-83; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000151 | ubiquitin ligase complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.182; coverage=52.133; evalue=3.06e-27; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000791 | euchromatin | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.505; coverage=23.934; evalue=6.36e-27; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000792 | heterochromatin | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.505; coverage=23.934; evalue=6.36e-27; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0001739 | sex chromatin | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.505; coverage=23.934; evalue=6.36e-27; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.244; coverage=92.18; evalue=4.32e-83; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.505; coverage=23.934; evalue=6.36e-27; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005694 | chromosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.182; coverage=52.133; evalue=3.06e-27; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.244; coverage=92.18; evalue=4.32e-83; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016604 | nuclear body | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.182; coverage=52.133; evalue=3.06e-27; UniProt GO evidence=ISS:ZFIN | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031519 | PcG protein complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.182; coverage=52.133; evalue=3.06e-27; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035102 | PRC1 complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.244; coverage=92.18; evalue=4.32e-83; UniProt GO evidence=IPI:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071339 | MLL1 complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.182; coverage=52.133; evalue=3.06e-27; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990904 | ribonucleoprotein complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.505; coverage=23.934; evalue=6.36e-27; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003682 | chromatin binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.182; coverage=52.133; evalue=3.06e-27; UniProt GO evidence=ISS:ZFIN | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.244; coverage=92.18; evalue=4.32e-83; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061630 | ubiquitin protein ligase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.244; coverage=92.18; evalue=4.32e-83; UniProt GO evidence=IEA:UniProtKB-EC | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071535 | RING-like zinc finger domain binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.505; coverage=23.934; evalue=6.36e-27; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140862 | histone H2AK119 ubiquitin ligase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.182; coverage=52.133; evalue=3.06e-27; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G03770 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=41.397; coverage=95.024; evalue=6.79e-78 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G44280 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.244; coverage=92.18; evalue=4.32e-83 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:19821 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.505; coverage=23.934; evalue=7.81e-27 | UniProtKB/Swiss-Prot DAT 2026 current_release |