Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_038714 |
|---|---|
| Query reference | OH1004 |
| Location | Chr09:48624133-48626620 (-) |
| Description | Similar to MSI1: WD-40 repeat-containing protein MSI1 (Solanum lycopersicum OX%3D4081) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_038714 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 51 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At5g58230 |
Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. |
Arabidopsis MSI1 is required for epigenetic maintenance of reproductive development.2003 · DOI: 10.1242/dev.00470 Arabidopsis MSI1 is a component of the MEA/FIE Polycomb group complex and required for seed development.2003 · DOI: 10.1093/emboj/cdg444 Identification of new members of Fertilisation Independent Seed Polycomb Group pathway involved in the control of seed development in Arabidopsis thaliana.2004 · DOI: 10.1242/dev.01168 Loss of function of MULTICOPY SUPPRESSOR OF IRA 1 produces nonviable parthenogenetic embryos in Arabidopsis.2005 · DOI: 10.1016/j.cub.2005.02.066
|
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os03g0640100 |
Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. | No verified direct reference in this release |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000122 | negative regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.545; coverage=97.664; evalue=6.28e-158; UniProt GO evidence=IMP:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006260 | DNA replication | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.45; coverage=96.028; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006281 | DNA repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.45; coverage=96.028; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006310 | DNA recombination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=64.25; coverage=93.458; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006325 | chromatin organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.545; coverage=97.664; evalue=6.28e-158; UniProt GO evidence=IDA:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006335 | DNA replication-dependent chromatin assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.545; coverage=97.664; evalue=6.28e-158; UniProt GO evidence=IDA:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006338 | chromatin remodeling | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.45; coverage=96.028; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=64.5; coverage=93.458; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006355 | regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.45; coverage=96.028; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007307 | eggshell chorion gene amplification | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.545; coverage=97.664; evalue=6.28e-158; UniProt GO evidence=IC:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007346 | regulation of mitotic cell cycle | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.545; coverage=97.664; evalue=6.28e-158; UniProt GO evidence=IMP:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007379 | segment specification | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.545; coverage=97.664; evalue=6.28e-158; UniProt GO evidence=IMP:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009555 | pollen development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=64.5; coverage=93.458; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009793 | embryo development ending in seed dormancy | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=64.5; coverage=93.458; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009908 | flower development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=64.5; coverage=93.458; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009909 | regulation of flower development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=64.5; coverage=93.458; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010026 | trichome differentiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=64.5; coverage=93.458; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010214 | seed coat development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=64.5; coverage=93.458; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016480 | negative regulation of transcription by RNA polymerase III | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=64.5; coverage=93.458; evalue=0.0; UniProt GO evidence=IPI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031507 | heterochromatin formation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=64.5; coverage=93.458; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034728 | nucleosome organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.545; coverage=97.664; evalue=6.28e-158; UniProt GO evidence=IDA:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045787 | positive regulation of cell cycle | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=64.5; coverage=93.458; evalue=0.0; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045892 | negative regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.545; coverage=97.664; evalue=6.28e-158; UniProt GO evidence=IGI:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045893 | positive regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.545; coverage=97.664; evalue=6.28e-158; UniProt GO evidence=IDA:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045944 | positive regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.545; coverage=97.664; evalue=6.28e-158; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046689 | response to mercury ion | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=54.342; coverage=94.159; evalue=4.01e-157; UniProt GO evidence=IDA:dictyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048316 | seed development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=64.5; coverage=93.458; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048366 | leaf development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=64.5; coverage=93.458; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070828 | heterochromatin organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=64.5; coverage=93.458; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140718 | facultative heterochromatin formation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.545; coverage=97.664; evalue=6.28e-158; UniProt GO evidence=IC:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000785 | chromatin | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.545; coverage=97.664; evalue=6.28e-158; UniProt GO evidence=IDA:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.45; coverage=96.028; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005667 | transcription regulator complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.545; coverage=97.664; evalue=6.28e-158; UniProt GO evidence=IPI:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005677 | chromatin silencing complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=64.5; coverage=93.458; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005700 | polytene chromosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.545; coverage=97.664; evalue=6.28e-158; UniProt GO evidence=IDA:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016581 | NuRD complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.545; coverage=97.664; evalue=6.28e-158; UniProt GO evidence=IDA:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016589 | NURF complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.545; coverage=97.664; evalue=6.28e-158; UniProt GO evidence=IDA:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031523 | Myb complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.545; coverage=97.664; evalue=6.28e-158; UniProt GO evidence=IDA:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032991 | protein-containing complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=64.5; coverage=93.458; evalue=0.0; UniProt GO evidence=IPI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0033186 | CAF-1 complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.545; coverage=97.664; evalue=6.28e-158; UniProt GO evidence=IDA:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035097 | histone methyltransferase complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.545; coverage=97.664; evalue=6.28e-158; UniProt GO evidence=IDA:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035098 | ESC/E(Z) complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.545; coverage=97.664; evalue=6.28e-158; UniProt GO evidence=IDA:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070176 | DRM complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=64.5; coverage=93.458; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070822 | Sin3-type complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.545; coverage=97.664; evalue=6.28e-158; UniProt GO evidence=IDA:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0080008 | Cul4-RING E3 ubiquitin ligase complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=64.5; coverage=93.458; evalue=0.0; UniProt GO evidence=ISS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0090575 | RNA polymerase II transcription regulator complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.545; coverage=97.664; evalue=6.28e-158; UniProt GO evidence=IDA:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000976 | transcription cis-regulatory region binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.545; coverage=97.664; evalue=6.28e-158; UniProt GO evidence=IDA:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0001222 | transcription corepressor binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=64.5; coverage=93.458; evalue=0.0; UniProt GO evidence=IPI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042393 | histone binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.45; coverage=96.028; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042803 | protein homodimerization activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.545; coverage=97.664; evalue=6.28e-158; UniProt GO evidence=IPI:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042826 | histone deacetylase binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.545; coverage=97.664; evalue=6.28e-158; UniProt GO evidence=IDA:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT5G58230 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=64.5; coverage=93.458; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ddi:DDB_G0282529 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=54.342; coverage=94.159; evalue=4.01e-157 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dme:Dmel_CG4236 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.545; coverage=97.664; evalue=6.28e-158 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os03g0640100 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=64.25; coverage=93.458; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | sly:543534 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.45; coverage=96.028; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release |