Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_035576`
Query reference	OH1004
Location	Chr08:24860826-24862643 (-)
Description	Similar to YUC11: Probable indole-3-pyruvate monooxygenase YUCCA11 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_035576 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 23 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g21430`	Involved in auxin biosynthesis.	Auxin synthesized by the YUCCA flavin monooxygenases is essential for embryogenesis and leaf formation in Arabidopsis.2007 · DOI: 10.1105/tpc.107.053009
`At1g48910`	Involved in auxin biosynthesis.	Auxin synthesized by the YUCCA flavin monooxygenases is essential for embryogenesis and leaf formation in Arabidopsis.2007 · DOI: 10.1105/tpc.107.053009
`At5g11320`	Involved in auxin biosynthesis.	Auxin biosynthesis by the YUCCA flavin monooxygenases controls the formation of floral organs and vascular tissues in Arabidopsis.2006 · DOI: 10.1101/gad.1415106 Auxin synthesized by the YUCCA flavin monooxygenases is essential for embryogenesis and leaf formation in Arabidopsis.2007 · DOI: 10.1105/tpc.107.053009
`At5g25620`	Involved in auxin biosynthesis via the indole-3-pyruvic acid (IPA) pathway.	Auxin biosynthesis by the YUCCA flavin monooxygenases controls the formation of floral organs and vascular tissues in Arabidopsis.2006 · DOI: 10.1101/gad.1415106 yucca6, a dominant mutation in Arabidopsis, affects auxin accumulation and auxin-related phenotypes.2007 · DOI: 10.1104/pp.107.104935 Overexpression of Arabidopsis YUCCA6 in potato results in high-auxin developmental phenotypes and enhanced resistance to water deficit.2013 · DOI: 10.1093/mp/sss100 The biochemical mechanism of auxin biosynthesis by an arabidopsis YUCCA flavin-containing monooxygenase.2013 · DOI: 10.1074/jbc.m112.424077
`At1g04180`	Involved in auxin biosynthesis.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006979	response to oxidative stress	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=47.507; coverage=100.0; evalue=2.68e-119; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009635	response to herbicide	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=47.721; coverage=97.9; evalue=9.05e-118; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009723	response to ethylene	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.764; coverage=97.9; evalue=6.18e-152; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009819	drought recovery	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=47.507; coverage=100.0; evalue=2.68e-119; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009851	auxin biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.764; coverage=97.9; evalue=6.18e-152; UniProt GO evidence=IEA:UniProtKB-UniPathway	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010038	response to metal ion	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=47.507; coverage=100.0; evalue=2.68e-119; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010262	somatic embryogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=47.507; coverage=100.0; evalue=2.68e-119; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000139	Golgi membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=46.649; coverage=97.9; evalue=1.29e-120; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005576	extracellular region	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.764; coverage=97.9; evalue=6.18e-152; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005654	nucleoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=46.649; coverage=97.9; evalue=1.29e-120; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=47.507; coverage=100.0; evalue=2.68e-119; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005783	endoplasmic reticulum	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=46.649; coverage=97.9; evalue=1.29e-120; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005789	endoplasmic reticulum membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=46.649; coverage=97.9; evalue=1.29e-120; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005794	Golgi apparatus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=46.649; coverage=97.9; evalue=1.29e-120; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005829	cytosol	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=46.649; coverage=97.9; evalue=1.29e-120; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009507	chloroplast	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.645; coverage=97.638; evalue=2.84e-151; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004497	monooxygenase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.764; coverage=97.9; evalue=6.18e-152; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004499	N,N-dimethylaniline monooxygenase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.764; coverage=97.9; evalue=6.18e-152; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0047134	protein-disulfide reductase [NAD(P)H] activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=47.507; coverage=100.0; evalue=2.68e-119; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0047434	indolepyruvate decarboxylase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=46.649; coverage=97.9; evalue=1.29e-120; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0050660	flavin adenine dinucleotide binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.764; coverage=97.9; evalue=6.18e-152; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0050661	NADP binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.764; coverage=97.9; evalue=6.18e-152; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0103075	indole-3-pyruvate monooxygenase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.764; coverage=97.9; evalue=6.18e-152; UniProt GO evidence=IEA:UniProtKB-EC	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G04180	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=47.721; coverage=97.9; evalue=9.05e-118	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G21430	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.764; coverage=97.9; evalue=6.18e-152	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G48910	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.645; coverage=97.638; evalue=2.84e-151	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G11320	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=46.649; coverage=97.9; evalue=1.29e-120	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G25620	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=47.507; coverage=100.0; evalue=2.68e-119	UniProtKB/Swiss-Prot DAT 2026 current_release