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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_029472
Query referenceOH1004
LocationChr06:91600957-91603096 (-)
DescriptionSimilar to DOF4.6: Dof zinc finger protein DOF4.6 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_029472 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 11 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g24060 Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. No verified direct reference in this release
At3g61850 Transcription factor specifically involved in the maternal control of seed germination. No verified direct reference in this release
At1g64620 Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os04g0567800 Transcription factor that may transactivate seed storage protein genes in developing seeds. No verified direct reference in this release
Os02g0673700 Transcription factor that may transactivate seed storage protein genes in developing seeds. No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006351DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.787; coverage=55.592; evalue=6.01e-20; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006355regulation of DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.787; coverage=55.592; evalue=6.01e-20; UniProt GO evidence=TAS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009639response to red or far red lightBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.333; coverage=80.921; evalue=5.25e-17; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009845seed germinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.333; coverage=80.921; evalue=5.25e-17; UniProt GO evidence=IMP:TIGRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045892negative regulation of DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.333; coverage=80.921; evalue=5.25e-17; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.787; coverage=55.592; evalue=6.01e-20; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000976transcription cis-regulatory region bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.333; coverage=80.921; evalue=5.25e-17; UniProt GO evidence=IPI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003677DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.787; coverage=55.592; evalue=6.01e-20; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003682chromatin bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.333; coverage=80.921; evalue=5.25e-17; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003700DNA-binding transcription factor activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.787; coverage=55.592; evalue=6.01e-20; UniProt GO evidence=ISS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008270zinc ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.787; coverage=55.592; evalue=6.01e-20; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G64620KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.952; coverage=34.539; evalue=2.39e-13UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G61850KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.333; coverage=80.921; evalue=5.25e-17UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G24060KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.787; coverage=55.592; evalue=6.01e-20UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os02g0673700KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.273; coverage=119.408; evalue=5.53e-11UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os04g0567800KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.098; coverage=107.895; evalue=7.06e-14UniProtKB/Swiss-Prot DAT 2026 current_release