Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_027978 |
|---|---|
| Query reference | OH1004 |
| Location | Chr06:28053637-28056872 (+) |
| Description | Similar to TCX5: Protein tesmin/TSO1-like CXC 5 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_027978 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 15 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At4g29000 |
Plays a role in development of both male and female reproductive tissues. | No verified direct reference in this release |
At2g20110 |
Plays a role in development of both male and female reproductive tissues. | No verified direct reference in this release |
At5g25790 |
Plays a role in development of both male and female reproductive tissues. | No verified direct reference in this release |
At3g16160 |
Plays a role in development of both male and female reproductive tissues. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000122 | negative regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.778; coverage=31.359; evalue=7.4e-38; UniProt GO evidence=IMP:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.778; coverage=31.359; evalue=7.4e-38; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006355 | regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.016; coverage=95.296; evalue=7.11e-173; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007283 | spermatogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.778; coverage=31.359; evalue=7.4e-38; UniProt GO evidence=IMP:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007307 | eggshell chorion gene amplification | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.778; coverage=31.359; evalue=7.4e-38; UniProt GO evidence=IC:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045892 | negative regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.778; coverage=31.359; evalue=7.4e-38; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045944 | positive regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.778; coverage=31.359; evalue=7.4e-38; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000785 | chromatin | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.778; coverage=31.359; evalue=7.4e-38; UniProt GO evidence=IDA:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.016; coverage=95.296; evalue=7.11e-173; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031523 | Myb complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.778; coverage=31.359; evalue=7.4e-38; UniProt GO evidence=IDA:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070176 | DRM complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.778; coverage=31.359; evalue=7.4e-38; UniProt GO evidence=IDA:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000987 | cis-regulatory region sequence-specific DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.961; coverage=71.951; evalue=2.28e-43; UniProt GO evidence=IPI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.778; coverage=31.359; evalue=7.4e-38; UniProt GO evidence=IDA:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003700 | DNA-binding transcription factor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.016; coverage=95.296; evalue=7.11e-173; UniProt GO evidence=ISS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046872 | metal ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.016; coverage=95.296; evalue=7.11e-173; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT2G20110 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=49.133; coverage=90.418; evalue=1.85e-154 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT3G16160 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.961; coverage=71.951; evalue=2.28e-43 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT4G29000 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.016; coverage=95.296; evalue=7.11e-173 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G25790 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=42.227; coverage=75.087; evalue=2.88e-96 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dme:Dmel_CG6061 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.778; coverage=31.359; evalue=7.4e-38 | UniProtKB/Swiss-Prot DAT 2026 current_release |