Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_025977 |
|---|---|
| Query reference | OH1004 |
| Location | Chr05:119324215-119325766 (-) |
| Description | Similar to ATH1: Homeobox protein ATH1 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_025977 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 16 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At4g32980 |
Transcription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. | No verified direct reference in this release |
At2g27220 |
BEL1-like homeodomain protein 5. | No verified direct reference in this release |
At2g16400 |
BEL1-like homeodomain protein 7. | No verified direct reference in this release |
At1g19700 |
BEL1-like homeodomain protein 10. | No verified direct reference in this release |
At4g34610 |
BEL1-like homeodomain protein 6. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.922; coverage=70.32; evalue=7.38e-94; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006357 | regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.922; coverage=70.32; evalue=7.38e-94; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008285 | negative regulation of cell population proliferation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.922; coverage=70.32; evalue=7.38e-94; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009640 | photomorphogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.922; coverage=70.32; evalue=7.38e-94; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010073 | meristem maintenance | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.922; coverage=70.32; evalue=7.38e-94; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010227 | floral organ abscission | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.922; coverage=70.32; evalue=7.38e-94; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010228 | vegetative to reproductive phase transition of meristem | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.922; coverage=70.32; evalue=7.38e-94; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010371 | regulation of gibberellin biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.922; coverage=70.32; evalue=7.38e-94; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0090470 | shoot organ boundary specification | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.922; coverage=70.32; evalue=7.38e-94; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.922; coverage=70.32; evalue=7.38e-94; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000976 | transcription cis-regulatory region binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.017; coverage=55.251; evalue=2.24e-43; UniProt GO evidence=IPI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.922; coverage=70.32; evalue=7.38e-94; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.302; coverage=57.534; evalue=8.43e-45; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.922; coverage=70.32; evalue=7.38e-94; UniProt GO evidence=ISS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003700 | DNA-binding transcription factor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.922; coverage=70.32; evalue=7.38e-94; UniProt GO evidence=ISS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043565 | sequence-specific DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.922; coverage=70.32; evalue=7.38e-94; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G19700 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=32.092; coverage=79.68; evalue=6.94e-42 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT2G16400 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.017; coverage=55.251; evalue=2.24e-43 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT2G27220 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.302; coverage=57.534; evalue=8.43e-45 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT4G32980 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.922; coverage=70.32; evalue=7.38e-94 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT4G34610 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.333; coverage=41.096; evalue=1.34e-41 | UniProtKB/Swiss-Prot DAT 2026 current_release |