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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_022480
Query referenceOH1004
LocationChr04:151207674-151208537 (-)
DescriptionSimilar to RPI3: Probable ribose-5-phosphate isomerase 3%2C chloroplastic (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_022480 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 13 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g04790 Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. No verified direct reference in this release
At2g01290 Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
Deficiency in a cytosolic ribose-5-phosphate isomerase causes chloroplast dysfunction, late flowering and premature cell death in Arabidopsis.2009 · DOI: 10.1111/j.1399-3054.2009.01276.x
At1g71100 Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. No verified direct reference in this release

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0009052pentose-phosphate shunt, non-oxidative branchBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.82; coverage=100.697; evalue=3.69e-135; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010228vegetative to reproductive phase transition of meristemBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=62.8; coverage=87.108; evalue=2.56e-104; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0019253reductive pentose-phosphate cycleBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.82; coverage=100.697; evalue=3.69e-135; UniProt GO evidence=NAS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0030244cellulose biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.348; coverage=86.063; evalue=6.75e-101; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0046109uridine biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.348; coverage=86.063; evalue=6.75e-101; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=62.8; coverage=87.108; evalue=2.56e-104; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.82; coverage=100.697; evalue=3.69e-135; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.82; coverage=100.697; evalue=3.69e-135; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009535chloroplast thylakoid membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.82; coverage=100.697; evalue=3.69e-135; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009570chloroplast stromaCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.82; coverage=100.697; evalue=3.69e-135; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009579thylakoidCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.82; coverage=100.697; evalue=3.69e-135; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009941chloroplast envelopeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.82; coverage=100.697; evalue=3.69e-135; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004751ribose-5-phosphate isomerase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.82; coverage=100.697; evalue=3.69e-135; UniProt GO evidence=IEA:UniProtKB-ECUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G71100KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.348; coverage=86.063; evalue=6.75e-101UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G01290KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=62.8; coverage=87.108; evalue=2.56e-104UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G04790KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.82; coverage=100.697; evalue=3.69e-135UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdal:Dalk_2973KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=52.193; coverage=79.443; evalue=4.93e-68UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGpfa:PF3D7_0514600KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=46.93; coverage=79.443; evalue=3.54e-68UniProtKB/Swiss-Prot DAT 2026 current_release