Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_021120`
Query reference	OH1004
Location	Chr04:122062981-122068508 (-)
Description	Similar to PCMP-E47: Pentatricopeptide repeat-containing protein At2g03380%2C mitochondrial (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_021120 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 17 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g03380`	Pentatricopeptide repeat-containing protein At2g03380, mitochondrial.	No verified direct reference in this release
`At1g11290`	Involved in multiple sites RNA editing events in chloroplasts.	Pentatricopeptide repeat proteins with the DYW motif have distinct molecular functions in RNA editing and RNA cleavage in Arabidopsis chloroplasts.2009 · DOI: 10.1105/tpc.108.064667
`At4g18750`	Plays a major role in single RNA editing events in chloroplasts.	Identification of two pentatricopeptide repeat genes required for RNA editing and zinc binding by C-terminal cytidine deaminase-like domains.2013 · DOI: 10.1074/jbc.m113.485755
`At4g33990`	Pentatricopeptide repeat-containing protein At4g33990.	No verified direct reference in this release
`At3g01580`	Putative pentatricopeptide repeat-containing protein At3g01580.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006397	mRNA processing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.862; coverage=81.805; evalue=3.45e-119; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006979	response to oxidative stress	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.596; coverage=82.793; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009451	RNA modification	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.596; coverage=82.793; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009651	response to salt stress	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.596; coverage=82.793; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009737	response to abscisic acid	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.596; coverage=82.793; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010087	phloem or xylem histogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.536; coverage=82.087; evalue=5.99e-107; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010305	leaf vascular tissue pattern formation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.536; coverage=82.087; evalue=5.99e-107; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010588	cotyledon vascular tissue pattern formation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.536; coverage=82.087; evalue=5.99e-107; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016556	mRNA modification	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.862; coverage=81.805; evalue=3.45e-119; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048366	leaf development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.536; coverage=82.087; evalue=5.99e-107; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1900865	chloroplast RNA modification	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.536; coverage=82.087; evalue=5.99e-107; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005739	mitochondrion	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.596; coverage=82.793; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009507	chloroplast	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.862; coverage=81.805; evalue=3.45e-119; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003723	RNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.596; coverage=82.793; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003729	mRNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.862; coverage=81.805; evalue=3.45e-119; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004519	endonuclease activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.862; coverage=81.805; evalue=3.45e-119; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008270	zinc ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.862; coverage=81.805; evalue=3.45e-119; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G11290	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.862; coverage=81.805; evalue=3.45e-119	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G03380	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.596; coverage=82.793; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G18750	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.536; coverage=82.087; evalue=5.99e-107	UniProtKB/Swiss-Prot DAT 2026 current_release