Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_018163 |
|---|---|
| Query reference | OH1004 |
| Location | Chr04:7879873-7883423 (-) |
| Description | Similar to v1g244155: Zinc finger CCCH-type with G patch domain-containing protein (Nematostella vectensis OX%3D45351) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_018163 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 16 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At1g17070 |
Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events (By similarity). |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000122 | negative regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.846; coverage=8.808; evalue=3.29e-11; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000390 | spliceosomal complex disassembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.636; coverage=11.924; evalue=9.03e-09; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000398 | mRNA splicing, via spliceosome | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.636; coverage=11.924; evalue=9.03e-09; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.846; coverage=8.808; evalue=3.29e-11; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042752 | regulation of circadian rhythm | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.636; coverage=11.924; evalue=9.03e-09; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.846; coverage=8.808; evalue=3.29e-11; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005730 | nucleolus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=50.0; coverage=7.588; evalue=1.54e-10; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016607 | nuclear speck | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=50.0; coverage=7.588; evalue=1.54e-10; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031981 | nuclear lumen | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.636; coverage=11.924; evalue=9.03e-09; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071008 | U2-type post-mRNA release spliceosomal complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.636; coverage=11.924; evalue=9.03e-09; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.846; coverage=8.808; evalue=3.29e-11; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0001227 | DNA-binding transcription repressor activity, RNA polymerase II-specific | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.846; coverage=8.808; evalue=3.29e-11; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003676 | nucleic acid binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=50.0; coverage=7.588; evalue=1.54e-10; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.636; coverage=11.924; evalue=9.03e-09; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.846; coverage=8.808; evalue=3.29e-11; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990446 | U1 snRNP binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.636; coverage=11.924; evalue=9.03e-09; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G17070 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.636; coverage=11.924; evalue=9.03e-09 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:55105 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=47.458; coverage=7.995; evalue=4.31e-09 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:67769 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=50.0; coverage=7.588; evalue=1.54e-10 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | nve:5510508 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.846; coverage=8.808; evalue=3.29e-11 | UniProtKB/Swiss-Prot DAT 2026 current_release |