RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

Download current result

Gene IDLXL04_011960
Query referenceOH1004
LocationChr03:3665470-3666078 (+)
DescriptionSimilar to ERF025: Ethylene-responsive transcription factor ERF025 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_011960 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 13 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g52020 Probably acts as a transcriptional activator. No verified direct reference in this release
At5g51990 Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'.
Transcription factor CBF4 is a regulator of drought adaptation in Arabidopsis.2002 · DOI: 10.1104/pp.006478
At4g25490 Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'.
Genetic and molecular analyses of natural variation indicate CBF2 as a candidate gene for underlying a freezing tolerance quantitative trait locus in Arabidopsis.2005 · DOI: 10.1104/pp.105.068510

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0968800 Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. No verified direct reference in this release
UniProt: A2WZI4 Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006351DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.718; coverage=87.624; evalue=4.24e-40; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009409response to coldBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=47.093; coverage=85.149; evalue=3.34e-37; UniProt GO evidence=IMP:TIGRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009414response to water deprivationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=47.093; coverage=85.149; evalue=3.34e-37; UniProt GO evidence=IEP:TIGRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009631cold acclimationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=47.093; coverage=85.149; evalue=3.34e-37; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009738abscisic acid-activated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=42.286; coverage=86.634; evalue=1.23e-37; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009873ethylene-activated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.718; coverage=87.624; evalue=4.24e-40; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0019760glucosinolate metabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.718; coverage=87.624; evalue=4.24e-40; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045893positive regulation of DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=47.093; coverage=85.149; evalue=3.34e-37; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0050832defense response to fungusBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.718; coverage=87.624; evalue=4.24e-40; UniProt GO evidence=IEP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.718; coverage=87.624; evalue=4.24e-40; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000976transcription cis-regulatory region bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.718; coverage=87.624; evalue=4.24e-40; UniProt GO evidence=IPI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003677DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=52.98; coverage=74.752; evalue=6.08e-38; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003700DNA-binding transcription factor activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.718; coverage=87.624; evalue=4.24e-40; UniProt GO evidence=ISS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G25490KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=47.093; coverage=85.149; evalue=3.34e-37UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G51990KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=42.286; coverage=86.634; evalue=1.23e-37UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G52020KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.718; coverage=87.624; evalue=4.24e-40UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os01g0968800KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=52.98; coverage=74.752; evalue=6.08e-38UniProtKB/Swiss-Prot DAT 2026 current_release